|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | aminoacylase activity, | 0.014322547 | GO:0004046 | | RNA_degradation | 0.020270217 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000915G0690 | Peptidase M20/M25/M40 family protein | AT4G38220 (6.90E-87) | | PH01001591G0190 | DCD (Development and Cell Death) domain protein | AT5G61910 (3.00E-168) | | PH01003343G0080 | - | - (-) | | PH01005517G0020 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT1G70200 (6.50E-29) | | PH01006233G0050 | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | AT2G32415 (2.00E-160) | | PH01053146G0010 | Thioredoxin superfamily protein | AT1G07700 (4.80E-37) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000202 | peroxiredoxin activity,
antioxidant activity,
RNA_degradation
GRAS Transcription_Regulator(from PlantTFDB)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM000355 | OFP Transcription_Regulator(from iTAK)
electron transport chain,
RNA_degradation
Photosynthesis
| details | | CFinderM000357 | RNA_degradation
steroid biosynthetic process,
S-adenosylmethionine-dependent methyltransferase activity,
| details | | CFinderM000509 | Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
| details | | CFinderM000510 | Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation
| details | | CFinderM000775 | Ribosome
iron_ion_transmembrane_transport
translation,
iron ion transmembrane transporter activity,
structural constituent of ribosome,
intracellular,
RNA_degradation
| details | | CFinderM000870 | cullin-RING ubiquitin ligase complex,
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000982 | RNA_degradation
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
cullin-RING ubiquitin ligase complex,
| details | | CFinderM001041 | isoprenoid biosynthetic process,
| details | | CFinderM001489 | Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
RNA_degradation
| details | | CFinderM001541 | Terpenoid_backbone_biosynthesis
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
| details | | CFinderM001576 | RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
| details | | CFinderM001750 | mTERF Transcription_Regulator(from iTAK)
endonuclease activity,
| details | | CFinderM001813 | GT48 GlycosylTransferases
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
1,3-beta-D-glucan synthase complex,
S-adenosylmethionine-dependent methyltransferase activity,
cytochrome-c oxidase activity,
steroid biosynthetic process,
(1->3)-beta-D-glucan biosynthetic process,
metabolic process,
RNA_degradation
Oxidative_phosphorylation
cellular metabolic process,
| details | | CFinderM001864 | GH63 Glycoside_Hydrolases
oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
oxygen evolving complex,
photosystem II,
extrinsic to membrane,
Photosynthesis
| details |
4.Expression profilings |
