CFinderM001489's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Steroid_hormone_biosynthesis0.016384213KEGG
Fatty_acid_elongation0.016384213KEGG
Biosynthesis_of_unsaturated_fatty_acids0.018702882KEGG
RNA_degradation0.042229619KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000283G0710-- (-)
PH01000429G0720-- (-)
PH01001166G0460transducin family protein / WD-40 repeat family proteinAT2G46560 (0.00E+00)
PH01001859G0270Phototropic-responsive NPH3 family proteinAT5G66560 (4.30E-91)
PH01002064G0260beta-ketoacyl reductase 1AT1G67730 (3.00E-104)
PH01006233G0050Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domainAT2G32415 (2.00E-160)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000202peroxiredoxin activity,
antioxidant activity,
RNA_degradation
GRAS Transcription_Regulator(from PlantTFDB)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM000355OFP Transcription_Regulator(from iTAK)
electron transport chain,
RNA_degradation
Photosynthesis
details
CFinderM000357RNA_degradation
steroid biosynthetic process,
S-adenosylmethionine-dependent methyltransferase activity,
details
CFinderM000509Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
details
CFinderM000510Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation
details
CFinderM000775Ribosome
iron_ion_transmembrane_transport
translation,
iron ion transmembrane transporter activity,
structural constituent of ribosome,
intracellular,
RNA_degradation
details
CFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
details
CFinderM000878Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
details
CFinderM000936NAD biosynthetic process,
phospholipid transport,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
nicotinate phosphoribosyltransferase activity,
phospholipid-translocating ATPase activity,
details
CFinderM000982RNA_degradation
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
cullin-RING ubiquitin ligase complex,
details
CFinderM001091DBP Transcription_Regulator(from iTAK)
protein dephosphorylation,
nucleosome assembly,
details
CFinderM001222aminoacylase activity,
RNA_degradation
details
CFinderM001335clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
WRKY Transcription_Regulator(from PlantTFDB)
Phagosome
details
CFinderM001576RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
details
CFinderM001664MYB_related Transcription_Regulator(from PlantTFDB)
GRAS Transcription_Regulator(from PlantTFDB)
details
CFinderM001691Spliceosome
Rab GTPase activator activity,
details
CFinderM001694TKL_CTR1-DRK-2 (from iTAK)
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
cytochrome-c oxidase activity,
histone acetyltransferase activity,
transcription cofactor activity,
details
CFinderM001813GT48 GlycosylTransferases
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
1,3-beta-D-glucan synthase complex,
S-adenosylmethionine-dependent methyltransferase activity,
cytochrome-c oxidase activity,
steroid biosynthetic process,
(1->3)-beta-D-glucan biosynthetic process,
metabolic process,
RNA_degradation
Oxidative_phosphorylation
cellular metabolic process,
details
CFinderM001864GH63 Glycoside_Hydrolases
oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
oxygen evolving complex,
photosystem II,
extrinsic to membrane,
Photosynthesis
details
CFinderM001893Golgi-associated vesicle,
Terpenoid_backbone_biosynthesis
membrane coat,
COPI vesicle coat,
isoprenoid biosynthetic process,
details

4.Expression profilings