|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | protein transport, | 0.031098557 | GO:0015031 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000921G0410 | Protein of unknown function (DUF726) | AT4G36210 (2.00E-141) | | PH01000942G0540 | SNF7 family protein | AT2G19830 (1.00E-44) | | PH01001621G0320 | 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | AT3G61140 (8.40E-88) | | PH01001627G0380 | glutathione S-transferase THETA 1 | AT5G41210 (3.80E-48) | | PH01004590G0080 | RPM1 interacting protein 2 | AT4G25230 (8.60E-87) | | PH01076040G0010 | RPM1 interacting protein 2 | AT4G25230 (3.50E-31) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity
| details | | CFinderM000746 | CMGC_DYRK-YAK (from iTAK)
TKL-Pl-6 (from iTAK)
| details | | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
| details | | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
| details | | CFinderM001109 | RLK-Pelle_LRR-VI-2 (from iTAK)
regulation of Rab GTPase activity,
Spliceosome
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001205 | ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001243 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein_kinase_binding
NAD+ ADP-ribosyltransferase activity,
| details | | CFinderM001383 | Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein transport,
small GTPase mediated signal transduction,
| details | | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
| details |
4.Expression profilings |
