CFinderM001425's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
chromosome organization,0.008756588GO:0051276
negative_regulation_of_transcription,_DNA-templated0.008756588GO:0045892
chromosome,0.015720244GO:0005694
RNA_degradation0.020270217KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000005G2550Structural maintenance of chromosomes (SMC) family proteinAT2G27170 (1.00E-101)
PH01000005G2560Structural maintenance of chromosomes (SMC) family proteinAT2G27170 (1.00E-131)
PH01000090G0390carboxyl-terminal domain (ctd) phosphatase-like 2AT5G01270 (7.00E-141)
PH01000300G0290transcription regulator NOT2/NOT3/NOT5 family proteinAT5G18230 (0.00E+00)
PH01000678G0660Protein of unknown function, DUF538AT1G55265 (4.90E-29)
PH01001203G0260Quinone reductase family proteinAT4G36750 (2.60E-80)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000679chromosome organization,
glucose metabolic process,
chromosome,
Glycolysis_/_Gluconeogenesis
details
CFinderM001035GT14 GlycosylTransferases
CAMTA Transcription_Regulator(from PlantTFDB)
microtubule,
protein complex,
RNA_degradation
Phagosome
details
CFinderM001126negative_regulation_of_transcription,_DNA-templated
RNA_degradation
details
CFinderM001429negative_regulation_of_transcription,_DNA-templated
FMN binding,
details
CFinderM001614nucleotide binding,
ATP binding,
chromosome organization,
valyl-tRNA aminoacylation,
valine-tRNA ligase activity,
GPI anchor biosynthetic process,
chromosome,
endoplasmic reticulum membrane,
DNA metabolic process,
aminoacyl-tRNA_editing_activity
DNA-dependent ATPase activity,
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
Homologous_recombination
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,
details
CFinderM001707glucose metabolic process,
valyl-tRNA aminoacylation,
negative_regulation_of_transcription,_DNA-templated
glucose-6-phosphate dehydrogenase activity,
aminoacyl-tRNA_editing_activity
valine-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
Pentose_phosphate_pathway
Glutathione_metabolism
tRNA aminoacylation for protein translation,
details
CFinderM001890clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
details

4.Expression profilings