CFinderM001429's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
negative_regulation_of_transcription,_DNA-templated0.000566976GO:0045892
FMN binding,0.018853594GO:0010181

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000010G3030Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family proteinAT5G04240 (7.80E-89)
PH01000032G0070Quinone reductase family proteinAT5G58800 (1.40E-66)
PH01000036G1820Trimeric LpxA-like enzymeAT2G34970 (0.00E+00)
PH01000045G1370-AT5G45410 (4.20E-89)
PH01000065G2160P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT1G50140 (0.00E+00)
PH01000138G1440epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedAT2G25430 (0.00E+00)
PH01000300G0290transcription regulator NOT2/NOT3/NOT5 family proteinAT5G18230 (0.00E+00)
PH01000450G0080plasma membrane intrinsic protein 2;8AT2G16850 (2.00E-132)
PH01000464G0270Lung seven transmembrane receptor family proteinAT5G18520 (6.00E-141)
PH01000497G0620prenylated RAB acceptor 1.B4AT2G38360 (6.90E-27)
PH01000678G0660Protein of unknown function, DUF538AT1G55265 (4.90E-29)
PH01001203G0260Quinone reductase family proteinAT4G36750 (2.60E-80)
PH01001697G0330P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT1G04280 (2.70E-85)
PH01001858G0220Bax inhibitor-1 family proteinAT3G63310 (3.70E-93)
PH01213872G0010UDP-Glycosyltransferase superfamily proteinAT5G12890 (3.20E-29)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000348transferase activity, transferring hexosyl groups,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
AUX/IAA Transcription_Regulator(from iTAK)
CAMK_CAMKL-CHK1 (from iTAK)
Drug_metabolism_-_other_enzymes
Ascorbate_and_aldarate_metabolism
Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Porphyrin_and_chlorophyll_metabolism
Pentose_and_glucuronate_interconversions
Steroid_hormone_biosynthesis
Retinol_metabolism
details
CFinderM000616metabolic process,
transferase activity, transferring hexosyl groups,
Alanine,_aspartate_and_glutamate_metabolism
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor,
Ascorbate_and_aldarate_metabolism
Porphyrin_and_chlorophyll_metabolism
Drug_metabolism_-_other_enzymes
Retinol_metabolism
Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Pentose_and_glucuronate_interconversions
Steroid_hormone_biosynthesis
details
CFinderM000942(1->3)-beta-D-glucan biosynthetic process,
negative_regulation_of_transcription,_DNA-templated
GT31 GlycosylTransferases
SNF2 Transcription_Regulator(from iTAK)
1,3-beta-D-glucan synthase complex,
details
CFinderM001035GT14 GlycosylTransferases
CAMTA Transcription_Regulator(from PlantTFDB)
microtubule,
protein complex,
RNA_degradation
Phagosome
details
CFinderM001054seryl-tRNA aminoacylation,
electron transport chain,
bZIP Transcription_Regulator(from PlantTFDB)
serine-tRNA ligase activity,
RNA metabolic process,
details
CFinderM001077SNARE_interactions_in_vesicular_transport
details
CFinderM001126negative_regulation_of_transcription,_DNA-templated
RNA_degradation
details
CFinderM001146TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
details
CFinderM001425chromosome organization,
negative_regulation_of_transcription,_DNA-templated
chromosome,
RNA_degradation
details
CFinderM001585bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001623Ribosome_biogenesis_in_eukaryotes
ribosome biogenesis,
GTP binding,
details
CFinderM001661RNA_transport
RNA metabolic process,
details
CFinderM001707glucose metabolic process,
valyl-tRNA aminoacylation,
negative_regulation_of_transcription,_DNA-templated
glucose-6-phosphate dehydrogenase activity,
aminoacyl-tRNA_editing_activity
valine-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
Pentose_phosphate_pathway
Glutathione_metabolism
tRNA aminoacylation for protein translation,
details
CFinderM001730Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001755STE_STE7 (from iTAK)
nucleotide-sugar transport,
S-adenosylmethionine_biosynthetic_process
carbohydrate transport,
details
CFinderM001780S-adenosylmethionine_biosynthetic_process
Cysteine_and_methionine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
methionine adenosyltransferase activity,
details
CFinderM001807GT31 GlycosylTransferases
SNF2 Transcription_Regulator(from iTAK)
details
CFinderM001856GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
details
CFinderM001888Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
details
CFinderM001890clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
details
CFinderM001891Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
details

4.Expression profilings


Show details about module gene expression profiling