|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Protein_processing_in_endoplasmic_reticulum | 0.000220684 | KEGG | | COPI vesicle coat, | 0.000220907 | GO:0030126 | | membrane coat, | 0.000237733 | GO:0030117 | | endoplasmic reticulum, | 0.000658457 | GO:0005783 | | RLK-Pelle_LysM (from iTAK) | 0.002809688 | GFam | | Golgi-associated vesicle, | 0.003210135 | GO:0005798 | | structural molecule activity, | 0.007708954 | GO:0005198 | | cell redox homeostasis, | 0.010777268 | GO:0045454 | | vesicle-mediated transport, | 0.010777268 | GO:0016192 | | intracellular protein transport, | 0.020930965 | GO:0006886 | | retrograde vesicle-mediated transport, Golgi to ER, | 0.020930965 | GO:0006890 | | nucleotide_phosphorylation | 0.023015429 | GO:0046939 | | Various_types_of_N-glycan_biosynthesis | 0.038828894 | KEGG | | N-Glycan_biosynthesis | 0.038828894 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000236G0210 | Ribophorin I | AT1G76400 (0.00E+00) | | PH01000236G0850 | adenosine kinase | AT2G37250 (1.00E-101) | | PH01000685G0720 | thioredoxin family protein | AT2G47470 (1.00E-147) | | PH01000747G0600 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein | AT3G52120 (1.20E-94) | | PH01000890G0740 | Coatomer epsilon subunit | AT2G34840 (2.00E-129) | | PH01001313G0120 | associated protein 19 | AT2G17380 (3.20E-82) | | PH01002103G0050 | PDI-like 1-3 | AT3G54960 (1.00E-106) | | PH01002461G0290 | chitin elicitor receptor kinase 1 | AT3G21630 (3.00E-121) | | PH01002976G0070 | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | AT4G34450 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM001232 | intracellular protein transport,
small GTPase mediated signal transduction,
GTP binding,
intracellular,
membrane coat,
endoplasmic reticulum,
protein transporter activity,
| details | | CFinderM001262 | RLK-Pelle_LRR-II (from iTAK)
bZIP Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum,
nucleotide kinase activity,
phosphotransferase activity, phosphate group as acceptor,
nucleobase-containing compound kinase activity,
nucleotide_phosphorylation
| details | | CFinderM001368 | Protein_processing_in_endoplasmic_reticulum
cell redox homeostasis,
endoplasmic reticulum,
| details | | CFinderM001557 | RLK-Pelle_LysM (from iTAK)
formate-tetrahydrofolate ligase activity,
phosphotransferase activity, for other substituted phosphate groups,
folic acid-containing compound biosynthetic process,
phospholipid biosynthetic process,
One_carbon_pool_by_folate
Various_types_of_N-glycan_biosynthesis
Carbon_fixation_pathways_in_prokaryotes
N-Glycan_biosynthesis
dolichyl-diphosphooligosaccharide-protein glycotransferase activity,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001558 | RLK-Pelle_LysM (from iTAK)
retrograde vesicle-mediated transport, Golgi to ER,
COPI vesicle coat,
NAC Transcription_Regulator(from PlantTFDB)
magnesium_ion_transport
| details | | CFinderM001737 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
Golgi_transport_complex
mTERF Transcription_Regulator(from iTAK)
membrane coat,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
protein transporter activity,
| details |
4.Expression profilings |
