|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | iron-sulfur cluster assembly, | 0.02368319 | GO:0016226 | | RNA processing, | 0.03488706 | GO:0006396 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000096G0370 | Pentatricopeptide repeat (PPR) superfamily protein | AT5G61990 (4.00E-118) | | PH01000260G0250 | pfkB-like carbohydrate kinase family protein | AT1G19600 (2.00E-120) | | PH01000316G0770 | dicer-like 3 | AT3G43920 (2.00E-134) | | PH01000750G0240 | ubiquitin-protein ligases | AT2G39810 (4.80E-92) | | PH01001817G0340 | SMAD/FHA domain-containing protein | AT5G47790 (3.00E-116) | | PH01004638G0100 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | AT3G63400 (3.50E-66) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000862 | DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
| details | | CFinderM001406 | chloroplast,
RNA processing,
| details | | CFinderM001492 | mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
| details | | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
| details | | CFinderM001527 | PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
| details | | CFinderM001554 | protein retention in ER lumen,
ER retention sequence binding,
peptidyl-prolyl cis-trans isomerase activity,
acid-amino acid ligase activity,
| details | | CFinderM001566 | DBP Transcription_Regulator(from iTAK)
helicase activity,
ATP-dependent 3'-5' DNA helicase activity,
Homologous_recombination
DNA recombination,
iron-sulfur cluster assembly,
protein dephosphorylation,
DNA repair,
DNA_replication
| details | | CFinderM001590 | protein processing,
peroxiredoxin activity,
antioxidant activity,
integral to membrane,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_elongation
oxidoreductase activity, acting on the CH-CH group of donors,
double-stranded RNA binding,
ribonuclease III activity,
| details | | CFinderM001636 | GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001678 | mRNA_cleavage_and_polyadenylation_specificity_factor_complex
mRNA cleavage,
protein retention in ER lumen,
mRNA_polyadenylation
RNA metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
ER retention sequence binding,
| details | | CFinderM001702 | ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
| details | | CFinderM001732 | | details | | CFinderM001798 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
| details | | CFinderM001803 | spliceosomal complex,
mitosis,
Spliceosome
protein dephosphorylation,
| details | | CFinderM001810 | mitosis,
spliceosomal complex,
Spliceosome
| details | | CFinderM001815 | | details |
4.Expression profilings |
