|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000168G0530 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT3G07810 (2.00E-115) | | PH01000238G0910 | thioredoxin family protein | AT2G47470 (2.00E-150) | | PH01000949G0370 | trigalactosyldiacylglycerol2 | AT3G20320 (9.00E-123) | | PH01001227G0430 | Endomembrane protein 70 protein family | AT5G10840 (0.00E+00) | | PH01001325G0580 | Pentatricopeptide repeat (PPR) superfamily protein | AT5G08305 (2.00E-106) | | PH01001424G0270 | RAB GTPase homolog A2C | AT3G46830 (5.00E-102) | | PH01002450G0290 | SWITCH/sucrose nonfermenting 3C | AT1G21700 (3.00E-149) | | PH01003357G0110 | replication factor C subunit 3 | AT1G77470 (1.00E-120) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000236 | NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM000341 | exosome_(RNase_complex)
COP9_signalosome
| details | | CFinderM000899 | glucose-6-phosphate dehydrogenase activity,
glucose metabolic process,
galactosyltransferase activity,
NADP binding,
Glutathione_metabolism
Pentose_phosphate_pathway
Glycine,_serine_and_threonine_metabolism
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate
Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin
protein glycosylation,
phosphoserine phosphatase activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides,
chorismate mutase activity,
chorismate metabolic process,
| details | | CFinderM000995 | nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
| details | | CFinderM001014 | SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
| details | | CFinderM001036 | GT10 GlycosylTransferases
Various_types_of_N-glycan_biosynthesis
Fructose_and_mannose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
protein glycosylation,
Protein_processing_in_endoplasmic_reticulum
Butirosin_and_neomycin_biosynthesis
Streptomycin_biosynthesis
calcium ion transport,
hexokinase activity,
calcium:proton_antiporter_activity
UDP-glucose:glycoprotein_glucosyltransferase_activity
fucosyltransferase_activity
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
| details | | CFinderM001042 | CK1_CK1 (from iTAK)
protein transport,
Citrate_cycle_(TCA_cycle)
Carbon_fixation_pathways_in_prokaryotes
Endocytosis
| details | | CFinderM001078 | actin cytoskeleton,
actin_filament_depolymerization
actin binding,
intracellular,
| details | | CFinderM001187 | glycogen biosynthetic process,
'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity
| details | | CFinderM001195 | nucleic acid binding,
ARF Transcription_Regulator(from PlantTFDB)
B3-ARF Transcription_Regulator(from iTAK)
C3H Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum,
response to hormone stimulus,
glycerol ether metabolic process,
Protein_processing_in_endoplasmic_reticulum
| details | | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum
mannose biosynthetic process,
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
phosphomannomutase activity,
histone_lysine_methylation
| details | | CFinderM001583 | endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001627 | SET Transcription_Regulator(from iTAK)
intracellular protein transport,
SNARE_interactions_in_vesicular_transport
mRNA_surveillance_pathway
| details | | CFinderM001629 | mRNA_surveillance_pathway
peptide-methionine-(S)-S-oxide reductase activity,
| details | | CFinderM001794 | NAK (from iTAK)
vacuolar_proton-transporting_V-type_ATPase,_V0_domain
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
hydrogen ion transmembrane transporter activity,
calcium ion transport,
myosin complex,
calcium:proton_antiporter_activity
motor activity,
cation transmembrane transporter activity,
| details | | CFinderM001875 | histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
| details |
4.Expression profilings |
