CFinderM001629's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mRNA_surveillance_pathway0.0255358KEGG
peptide-methionine-(S)-S-oxide reductase activity,0.028924346GO:0008113

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000055G1750RNA-binding (RRM/RBD/RNP motifs) family proteinAT1G14340 (2.30E-61)
PH01000168G0530RNA-binding (RRM/RBD/RNP motifs) family proteinAT3G07810 (2.00E-115)
PH01000407G0170Peptide methionine sulfoxide reductase family proteinAT2G18030 (1.20E-87)
PH01001325G0580Pentatricopeptide repeat (PPR) superfamily proteinAT5G08305 (2.00E-106)
PH01001424G0270RAB GTPase homolog A2CAT3G46830 (5.00E-102)
PH01002218G0080plant VAP homolog 12AT2G45140 (3.30E-73)
PH01002385G0200REF4-related 1AT3G23590 (3.10E-53)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000591HB-other Transcription_Regulator(from PlantTFDB)
SNARE_interactions_in_vesicular_transport
WASH_complex
actin cytoskeleton,
spliceosomal complex,
pre-mRNA_intronic_binding
details
CFinderM000805Sulfur_metabolism
cysteine biosynthetic process from serine,
peptide-methionine-(S)-S-oxide reductase activity,
cysteine synthase activity,
Cysteine_and_methionine_metabolism
cellulose biosynthetic process,
chaperone binding,
cellulose synthase (UDP-forming) activity,
details
CFinderM001408outer membrane,
peptide-methionine-(S)-S-oxide reductase activity,
details
CFinderM001549SNARE_interactions_in_vesicular_transport
vesicle-mediated transport,
intracellular protein transport,
SNAP receptor activity,
structural molecule activity,
details
CFinderM001583endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001584details
CFinderM001627SET Transcription_Regulator(from iTAK)
intracellular protein transport,
SNARE_interactions_in_vesicular_transport
mRNA_surveillance_pathway
details
CFinderM001652mRNA_cleavage_factor_complex
GT31 GlycosylTransferases
mRNA_polyadenylation
mRNA_binding
mRNA_surveillance_pathway
protein glycosylation,
cellulose biosynthetic process,
membrane,
details

4.Expression profilings