|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | nuclear pore, | 0.006733037 | GO:0005643 | | MYB-related Transcription_Regulator(from iTAK) | 0.023755064 | GFam | | MYB_related Transcription_Regulator(from PlantTFDB) | 0.023755064 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000014G1010 | CTC-interacting domain 7 | AT2G26280 (2.00E-104) | | PH01001800G0210 | myb-like transcription factor family protein | AT5G56840 (1.30E-39) | | PH01002545G0030 | - | - (-) | | PH01003179G0070 | Nucleoporin interacting component (Nup93/Nic96-like) family protein | AT2G41620 (0.00E+00) | | PH01003930G0110 | Transducin/WD40 repeat-like superfamily protein | AT3G21060 (9.00E-172) | | PH01005426G0050 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT4G01990 (1.90E-83) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000691 | ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
| details | | CFinderM000787 | TKL-Pl-3 (from iTAK)
RLK-Pelle_LRR-II (from iTAK)
RNA-directed RNA polymerase activity,
protein phosphorylation,
| details | | CFinderM000995 | nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001205 | ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001440 | Mismatch_repair
nucleotide-excision repair,
Mismatch_repair
nuclear pore,
nucleobase-containing compound metabolic process,
| details | | CFinderM001502 | SET Transcription_Regulator(from iTAK)
ribonucleoprotein complex,
nucleus,
histone_lysine_methylation
RNA processing,
| details | | CFinderM001582 | cellular_homeostasis
Peroxisome
mitochondrial outer membrane,
protein methylation,
| details | | CFinderM001625 | SNF2 Transcription_Regulator(from iTAK)
cellular_homeostasis
mitochondrial outer membrane,
RNA methylation,
Homologous_recombination
| details | | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
| details | | CFinderM001831 | | details | | CFinderM001848 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
| details | | CFinderM001882 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
| details |
4.Expression profilings |
