CFinderM001779's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
pseudouridine synthesis,0.015008072GO:0001522
RNA modification,0.015008072GO:0009451
RNA binding,0.033017758GO:0003723
binding,0.033017758GO:0005488
pseudouridine synthase activity,0.033017758GO:0009982

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000000G5690Pseudouridine synthase family proteinAT1G20410 (3.00E-132)
PH01000005G1170THUMP domain-containing proteinAT5G12410 (7.40E-82)
PH01000023G1230ARM repeat superfamily proteinAT3G06530 (0.00E+00)
PH01000373G0800Protein of unknown function (DUF3414)AT4G38760 (3.90E-25)
PH01001239G0180embryo defective 3012AT5G40480 (4.70E-89)
PH01001711G0360COP1-interacting protein 8AT5G64920 (4.20E-28)
PH01001858G0260ARM repeat superfamily proteinAT5G48120 (5.00E-135)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000885SNF2 Transcription_Regulator(from iTAK)
valyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
valine-tRNA ligase activity,
protein binding,
aminoacyl-tRNA_editing_activity
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
tRNA aminoacylation for protein translation,
cellulose biosynthetic process,
details
CFinderM001252SET Transcription_Regulator(from iTAK)
eukaryotic translation initiation factor 3 complex,
RNA_transport
protein binding,
details
CFinderM001399RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
details
CFinderM001659protein import into nucleus,
nuclear pore,
details
CFinderM001661RNA_transport
RNA metabolic process,
details
CFinderM001767RLK-Pelle_PERK-1 (from iTAK)
RNA methylation,
nucleoside transmembrane transporter activity,
carboxyl- or carbamoyltransferase activity,
RNA methyltransferase activity,
O-methyltransferase activity,
RNA_transport
cellular amino acid metabolic process,
amino acid binding,
details
CFinderM001780S-adenosylmethionine_biosynthetic_process
Cysteine_and_methionine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
methionine adenosyltransferase activity,
details
CFinderM001855Base_excision_repair
GPI anchor metabolic process,
DNA recombination,
details
CFinderM001861SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
details

4.Expression profilings