|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | SNARE_interactions_in_vesicular_transport | 0.030874225 | KEGG | | acid-amino acid ligase activity, | 0.044177173 | GO:0016881 | | Ubiquitin_mediated_proteolysis | 0.046269678 | KEGG | | mRNA_surveillance_pathway | 0.046269678 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000067G0360 | cleavage and polyadenylation specificity factor 160 | AT5G51660 (0.00E+00) | | PH01000086G1000 | Target SNARE coiled-coil domain protein | AT4G14600 (1.90E-17) | | PH01000373G0800 | Protein of unknown function (DUF3414) | AT4G38760 (3.90E-25) | | PH01000496G0830 | Ubiquitin-conjugating enzyme family protein | AT1G45050 (3.10E-85) | | PH01001450G0190 | Late embryogenesis abundant protein (LEA) family protein | AT3G62580 (1.30E-83) | | PH01003376G0110 | Bax inhibitor-1 family protein | AT4G15470 (5.10E-83) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000671 | SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001077 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001146 | TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
| details | | CFinderM001204 | Mre11 complex,
nucleolus,
DNA repair,
| details | | CFinderM001315 | STE_STE-Pl (from iTAK)
| details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001463 | alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
GRAS Transcription_Regulator(from PlantTFDB)
fatty acid metabolic process,
3-hydroxyacyl-CoA_dehydrogenase_activity
| details | | CFinderM001527 | PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
| details | | CFinderM001659 | protein import into nucleus,
nuclear pore,
| details | | CFinderM001660 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001669 | CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
| details | | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001752 | spindle pole,
microtubule organizing center,
STE_STE11 (from iTAK)
microtubule cytoskeleton organization,
mRNA_surveillance_pathway
| details | | CFinderM001767 | RLK-Pelle_PERK-1 (from iTAK)
RNA methylation,
nucleoside transmembrane transporter activity,
carboxyl- or carbamoyltransferase activity,
RNA methyltransferase activity,
O-methyltransferase activity,
RNA_transport
cellular amino acid metabolic process,
amino acid binding,
| details | | CFinderM001779 | pseudouridine synthesis,
RNA modification,
RNA binding,
binding,
pseudouridine synthase activity,
| details | | CFinderM001839 | GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
| details | | CFinderM001856 | GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
| details | | CFinderM001869 | DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
| details | | CFinderM001890 | clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
| details |
4.Expression profilings |
