CFinderADM000548's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Pyruvate metabolism | 0.000297176 | KEGG pathway |
| Protein export | 0.001013451 | KEGG pathway |
| proteolysis involved in cellular protein catabolic process | 0.003569221 | GO:0051603 |
| serine-type carboxypeptidase activity | 0.003830172 | GO:0004185 |
| helicase activity | 0.004328449 | GO:0004386 |
| microtubule | 0.005365132 | GO:0005874 |
| vacuole | 0.006424933 | GO:0005773 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.017711052 | cazy family |
| sequence-specific DNA binding | 0.03137802 | GO:0043565 |
| transcription factor activity, sequence-specific DNA binding | 0.048304071 | GO:0003700 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003919 | AT1G47720 (4.00E-37) | OSB1|Organellar Single-stranded |
| CRO_T011510 | AT1G26355 (3.00E-16) | SP1L1|SPIRAL1-like1 |
| CRO_T014103 | AT5G01110 (1.00E-51) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T017827 | - | - |
| CRO_T019723 | AT5G28540 (6.00E-147) | BIP1|heat shock protein 70 (Hsp 70) family protein |
| CRO_T021921 | AT1G64583 (1.00E-35) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T028535 | AT1G51380 (2.00E-12) | DEA(D/H)-box RNA helicase family protein |
| CRO_T030217 | AT1G11840 (5.00E-12) | ATGLX1|glyoxalase I homolog |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000261 | Protein export Ubiquitin mediated proteolysis formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: F-box nucleotide binding | details |
| CFinderADM000657 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase mRNA surveillance pathway cellular process microtubule intracellular part plastid adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM000661 | Transcription_related, Transcription regulator: Pseudo ARR-B polar nucleus Circadian rhythm - plant Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase RNA polymerase II transcription cofactor activity regulation of gene expression defense response to fungus phosphorelay signal transduction system mediator complex regulation of transcription from RNA polymerase II promoter plastid adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 intracellular protein kinase activity nucleotide binding | details |
| CFinderADM000663 | Transcription_related, Transcription regulator: Pseudo ARR-B regulation of gene expression Circadian rhythm - plant phosphorelay signal transduction system Spliceosome intracellular binding | details |
| CFinderADM001656 | Transcription_related, Transcription regulator: SET Plant-pathogen interaction calcium ion binding | details |
| CFinderADM001800 | peptidase activity, acting on L-amino acid peptides Ubiquitin_Proteasome_system, DUB: ULP Transcription_related, Transcription factor: C3H microtubule vacuolar membrane | details |
| CFinderADM001819 | formation of glycosidic bonds, GlycosylTransferases: GTnc L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity cystathionine gamma-lyase activity fucosyltransferase activity cystathionine beta-lyase activity Various types of N-glycan biosynthesis seleno-amino acid biosynthesis 'de novo' L-methionine biosynthetic process fucosylation maturation of 5S rRNA post-embryonic root development Golgi cisterna membrane spliceosomal snRNP assembly mRNA cis splicing, via spliceosome cotyledon vascular tissue pattern formation meristem structural organization leaf vascular tissue pattern formation U4/U6 x U5 tri-snRNP complex phloem or xylem histogenesis phosphatidylinositol binding flower development protein glycosylation microtubule pyridoxal phosphate binding Biosynthesis of amino acids nucleolus Spliceosome | details |
| CFinderADM001973 | Pyruvate metabolism response to stress Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: ERF Ubiquitin_Proteasome_system, E3 adaptor: F-box adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity protein phosphorylation | details |
| CFinderADM002011 | mitochondrial RNA metabolic process RNA modification Plant-pathogen interaction cytoplasmic part calcium ion binding intracellular membrane-bounded organelle formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |