CFinderADM001800's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| peptidase activity, acting on L-amino acid peptides | 1.96E-06 | GO:0070011 |
| Ubiquitin_Proteasome_system, DUB: ULP | 0.000111705 | ubs family |
| Transcription_related, Transcription factor: C3H | 0.000430853 | TF family |
| microtubule | 0.002026469 | GO:0005874 |
| vacuolar membrane | 0.003592314 | GO:0005774 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004677 | AT2G15970 (3.00E-43) | ATCOR413-PM1|COLD-REGULATED413 PLASMA MEMBRANE 1; ATCYP19|CYCLOPHILLIN 19; COR413-PM1|cold regulated 413 plasma membrane 1 |
| CRO_T005224 | AT3G06910 (1.00E-07) | ELS1|ESD4-LIKE SUMO PROTEASE 1; ULP1A|UB-like protease 1A |
| CRO_T007408 | AT1G21580 (2.00E-138) | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| CRO_T011510 | AT1G26355 (3.00E-16) | SP1L1|SPIRAL1-like1 |
| CRO_T030482 | AT5G43820 (1.00E-36) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000065 | regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion peptidase activity, acting on L-amino acid peptides modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of photomorphogenesis lipid transporter activity calcium-mediated signaling core promoter sequence-specific DNA binding Ubiquitin_Proteasome_system, DUB: ULP lipid transport transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Ras signaling pathway transcription from RNA polymerase II promoter Lysosome 2-alkenal reductase [NAD(P)] activity protein binding protein dimerization activity calcium ion binding | details |
| CFinderADM000548 | Pyruvate metabolism Protein export proteolysis involved in cellular protein catabolic process serine-type carboxypeptidase activity helicase activity microtubule vacuole formation of glycosidic bonds, GlycosylTransferases: GTnc sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM000657 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase mRNA surveillance pathway cellular process microtubule intracellular part plastid adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001056 | oxidative photosynthetic carbon pathway 'de novo' AMP biosynthetic process adenylosuccinate synthase activity hydroxyphenylpyruvate reductase activity rosmarinic acid biosynthesis II rosmarinic acid biosynthesis I hydroxypyruvate reductase activity glyoxylate reductase (NADP) activity Carbon metabolism 4-hydroxybenzoate biosynthesis I (eukaryotes) pyruvate decarboxylation to acetyl CoA adenosine ribonucleotides de novo biosynthesis NAD binding magnesium ion binding Purine metabolism Spliceosome GTP binding | details |
| CFinderADM001148 | Transcription_related, Transcription regulator: Pseudo ARR-B Ferroptosis integral component of membrane ferroxidase activity L-serine transmembrane transporter activity ferric iron binding iron ion transport L-serine transport cellular iron ion homeostasis protein-cysteine S-palmitoyltransferase activity Circadian rhythm - plant regulation of gene expression phosphorelay signal transduction system oxidation-reduction process vacuolar membrane intracellular oxidoreductase activity | details |
| CFinderADM001690 | pyrimidine ribonucleosides salvage I kinase activity peptidase activity, acting on L-amino acid peptides phosphorylation Ubiquitin_Proteasome_system, DUB: ULP integral component of membrane vacuolar membrane ATP binding | details |
| CFinderADM001819 | formation of glycosidic bonds, GlycosylTransferases: GTnc L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity cystathionine gamma-lyase activity fucosyltransferase activity cystathionine beta-lyase activity Various types of N-glycan biosynthesis seleno-amino acid biosynthesis 'de novo' L-methionine biosynthetic process fucosylation maturation of 5S rRNA post-embryonic root development Golgi cisterna membrane spliceosomal snRNP assembly mRNA cis splicing, via spliceosome cotyledon vascular tissue pattern formation meristem structural organization leaf vascular tissue pattern formation U4/U6 x U5 tri-snRNP complex phloem or xylem histogenesis phosphatidylinositol binding flower development protein glycosylation microtubule pyridoxal phosphate binding Biosynthesis of amino acids nucleolus Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |