CFinderADM000672's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3 adaptor: DDB1 | 0.000148372 | ubs family |
| equatorial microtubule organizing center | 0.000172995 | GO:0000923 |
| mismatch repair complex | 0.000172995 | GO:0032300 |
| gamma-tubulin small complex | 0.000172995 | GO:0008275 |
| centrosome duplication | 0.000345479 | GO:0051298 |
| nucleotide-sugar transport | 0.000345479 | GO:0015780 |
| meiotic nuclear division | 0.000345479 | GO:0007126 |
| mitotic spindle assembly | 0.000345479 | GO:0090307 |
| interphase microtubule nucleation by interphase microtubule organizing center | 0.000345479 | GO:0051415 |
| gamma-tubulin binding | 0.000537405 | GO:0043015 |
| microtubule minus-end binding | 0.000537405 | GO:0051011 |
| beta-N-acetylhexosaminidase activity | 0.000537405 | GO:0004563 |
| cullin-RING ubiquitin ligase complex | 0.000569403 | GO:0031461 |
| nucleotide-excision repair | 0.000645185 | GO:0006289 |
| Mismatch repair | 0.000645185 | KEGG pathway |
| mismatched DNA binding | 0.000647204 | GO:0030983 |
| red, far-red light phototransduction | 0.000677151 | GO:0009585 |
| cytoplasmic microtubule organization | 0.00082919 | GO:0031122 |
| nucleus | 0.001156033 | GO:0005634 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.001521481 | kinase family |
| structural constituent of cytoskeleton | 0.001959844 | GO:0005200 |
| calcium-dependent protein serine/threonine kinase activity | 0.002650889 | GO:0009931 |
| damaged DNA binding | 0.002650889 | GO:0003684 |
| calmodulin-dependent protein kinase activity | 0.002650889 | GO:0004683 |
| UDP-glucosyltransferase activity | 0.002650889 | GO:0035251 |
| ATP-dependent peptidase activity | 0.002650889 | GO:0004176 |
| Transcription_related, Transcription factor: ERF | 0.007812566 | TF family |
| protein autophosphorylation | 0.009354399 | GO:0046777 |
| abscisic acid-activated signaling pathway | 0.009354399 | GO:0009738 |
| peptidyl-serine phosphorylation | 0.009500096 | GO:0018105 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.009500096 | GO:0043161 |
| multicellular organism development | 0.009500096 | GO:0007275 |
| microtubule | 0.009970875 | GO:0005874 |
| plasma membrane | 0.01084 | GO:0005886 |
| Amino sugar and nucleotide sugar metabolism | 0.010997788 | KEGG pathway |
| Plant-pathogen interaction | 0.010997788 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.010997788 | KEGG pathway |
| calmodulin binding | 0.011960051 | GO:0005516 |
| intracellular signal transduction | 0.017656493 | GO:0035556 |
| protein ubiquitination | 0.027769598 | GO:0016567 |
| Golgi apparatus | 0.036022083 | GO:0005794 |
| calcium ion binding | 0.04487439 | GO:0005509 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000010 | AT5G06680 (0) | ATGCP3|GAMMA TUBULIN COMPLEX PROTEIN 3; ATSPC98|SPINDLE POLE BODY COMPONENT 98 |
| CRO_T000771 | AT2G25740 (3.00E-158) | ATP-dependent protease La (LON) domain protein |
| CRO_T002501 | AT1G76340 (2.00E-152) | GONST3|golgi nucleotide sugar transporter 3 |
| CRO_T004526 | AT2G35140 (3.00E-20) | DCD (Development and Cell Death) domain protein |
| CRO_T009784 | - | - |
| CRO_T010696 | AT1G05590 (2.00E-39) | ATHEX3|BETA-HEXOSAMINIDASE 3; HEXO2|beta-hexosaminidase 2 |
| CRO_T019793 | AT2G38910 (0) | CPK20|calcium-dependent protein kinase 20 |
| CRO_T020862 | AT5G44060 (8.00E-21) | unknown protein |
| CRO_T021391 | AT4G13040 (2.00E-29) | Integrase-type DNA-binding superfamily protein |
| CRO_T026183 | AT5G23950 (1.00E-16) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T029042 | AT3G55200 (2.00E-59) | AtSAP130a|spliceosome-associated protein 130 a |
| CRO_T032977 | AT3G18524 (0) | MSH2|MUTS homolog 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000296 | post-embryonic root development Transcription_related, Transcription regulator: LIM Mitophagy - animal PPAR signaling pathway MAPK signaling pathway - yeast anaphase-promoting complex binding ubiquitin-protein transferase activator activity protein domain specific binding 3'-5' exonuclease activity ATP-dependent peptidase activity regulation of catalytic activity nucleic acid phosphodiester bond hydrolysis Ubiquitin mediated proteolysis Ubiquitin_Proteasome_system, E3 adaptor: DWD calcium ion binding proteolysis binding RNA binding | details |
| CFinderADM000327 | GTPase activity GTP binding formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000470 | chaperone-mediated protein complex assembly regulation of mitochondrial DNA replication oxidation-dependent protein catabolic process protein demethylation misfolded or incompletely synthesized protein catabolic process production of siRNA involved in RNA interference RISC complex Cell cycle cellular response to oxidative stress RNA phosphodiester bond hydrolysis, endonucleolytic carboxylic ester hydrolase activity ribonuclease III activity ATP-dependent peptidase activity mitochondrial matrix protein ubiquitination vacuole serine-type endopeptidase activity ubiquitin-protein transferase activity sequence-specific DNA binding RNA binding | details |
| CFinderADM000739 | tRNA export from nucleus Protein_kinases_phosphatases, PPC:4.1.3: MAP2K CURI complex UTP-C complex MAP kinase kinase activity receptor signaling protein serine/threonine kinase activity rRNA processing MAPK cascade small-subunit processome helicase activity protein binding MAPK signaling pathway - plant Ribosome biogenesis in eukaryotes ATP binding nucleic acid binding | details |
| CFinderADM001126 | Cell cycle nuclear origin of replication recognition complex hydrolase activity Ribosome biogenesis in eukaryotes DNA replication kinase activity metabolic process phosphorylation transferase activity nucleic acid binding | details |
| CFinderADM001195 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc condensed chromosome kinetochore nuclear pore distribution transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery chromatin organization oligosaccharide metabolic process nuclear pore outer ring RNA export from nucleus beta-N-acetylhexosaminidase activity mannosyl-oligosaccharide glucosidase activity nucleocytoplasmic transporter activity protein N-linked glycosylation structural constituent of nuclear pore protein import into nucleus UDP-glucosyltransferase activity N-Glycan biosynthesis Amino sugar and nucleotide sugar metabolism GTPase activity RNA transport GTP binding endoplasmic reticulum membrane carbohydrate metabolic process | details |
| CFinderADM001289 | transaminase activity transmembrane transport hydrolase activity | details |
| CFinderADM001445 | sterol 24-C-methyltransferase activity interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication mitotic spindle assembly meiotic nuclear division microtubule minus-end binding gamma-tubulin binding gamma-tubulin small complex sterol biosynthetic process equatorial microtubule organizing center cytoplasmic microtubule organization plant sterol biosynthesis structural constituent of cytoskeleton Steroid biosynthesis iron-sulfur cluster binding iron-sulfur cluster assembly chloroplast embryo development ending in seed dormancy microtubule endosome vacuolar membrane trans-Golgi network methylation endoplasmic reticulum iron ion binding plasmodesma | details |
| CFinderADM001446 | interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication mitotic spindle assembly Ubiquitin_Proteasome_system, E3 adaptor: Cullin gamma-tubulin small complex meiotic nuclear division equatorial microtubule organizing center anaphase-promoting complex gamma-tubulin binding microtubule minus-end binding phosphogluconate dehydrogenase (decarboxylating) activity spindle cytoplasmic microtubule organization megagametogenesis chloroplast structural constituent of cytoskeleton iron-sulfur cluster assembly iron-sulfur cluster binding ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis microtubule NAD binding ubiquitin protein ligase activity iron ion binding | details |
| CFinderADM001805 | phosphatidylethanolamine biosynthesis I negative regulation of reductive pentose-phosphate cycle Ubiquitin_Proteasome_system, E3 adaptor: DDB1 red, far-red light phototransduction nucleotide-excision repair protein complex cullin-RING ubiquitin ligase complex Ran GTPase binding damaged DNA binding proteasome-mediated ubiquitin-dependent protein catabolic process methyltransferase activity Ubiquitin mediated proteolysis cellular process RNA transport intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: DWD protein ubiquitination methylation intracellular | details |
| CFinderADM001867 | actin filament polymerization BAT3 complex protein insertion into ER membrane TAT protein transport complex flavin-linked sulfhydryl oxidase activity soluble NSF attachment protein activity syntaxin binding protein secretion membrane fusion Arp2/3 complex-mediated actin nucleation integral component of Golgi membrane Arp2/3 protein complex protein disulfide isomerase activity actin binding extracellular space Protein export SNARE complex protein transporter activity Transcription_related, Transcription factor: ERF Endocytosis multicellular organism development cell redox homeostasis protein folding intracellular protein transport vacuolar membrane chloroplast envelope chloroplast thylakoid membrane transcription factor activity, sequence-specific DNA binding transcription, DNA-templated | details |
| CFinderADM001910 | Transcription_related, Transcription factor: BES1 regulation of alternative mRNA splicing, via spliceosome brassinosteroid mediated signaling pathway seed germination cytoplasmic mRNA processing body Transcription_related, Transcription regulator: mTERF nucleic acid binding RNA secondary structure unwinding ATP-dependent RNA helicase activity organic cyclic compound binding heterocyclic compound binding Plant hormone signal transduction protein dimerization activity Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001933 | tRNA methylation UFM1 hydrolase activity tRNA (guanine) methyltransferase activity tRNA (guanine(37)-N(1))-methyltransferase activity defense response to bacterium cytosol mitochondrial matrix ATPase activity RNA binding | details |
| CFinderADM001953 | Protein digestion and absorption serine-type peptidase activity Transcription_related, Transcription factor: ERF vesicle-mediated transport multicellular organism development nucleus transcription factor activity, sequence-specific DNA binding proteolysis transcription, DNA-templated DNA binding regulation of transcription, DNA-templated | details |
| CFinderADM001954 | rRNA (uridine-2'-O-)-methyltransferase activity enzyme-directed rRNA 2'-O-methylation Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex ubiquitin protein ligase binding Ubiquitin mediated proteolysis Transcription_related, Transcription factor: ERF protein ubiquitination involved in ubiquitin-dependent protein catabolic process multicellular organism development vesicle-mediated transport ubiquitin protein ligase activity transcription factor activity, sequence-specific DNA binding transcription, DNA-templated | details |
| CFinderADM001980 | Proteasome nucleus dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity positive regulation of circadian rhythm dolichol metabolic process entrainment of circadian clock protein O-linked mannosylation photoperiodism, flowering response to red light red or far-red light signaling pathway protein N-glycosylation (eukaryotic, high mannose) cytosolic proteasome complex proteasome core complex, alpha-subunit complex nuclear proteasome complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GPI anchor biosynthetic process protein N-linked glycosylation proteasome regulatory particle, base subcomplex regulation of flower development proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding threonine-type endopeptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription factor: G2-like N-Glycan biosynthesis calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity Plant-pathogen interaction plasma membrane cytoplasm protein autophosphorylation abscisic acid-activated signaling pathway peptidyl-serine phosphorylation multicellular organism development ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: ERF protein homodimerization activity peptidase activity calmodulin binding intracellular signal transduction endoplasmic reticulum membrane calcium ion binding ATP binding | details |
| CFinderADM002089 | unfolded protein binding protein folding clathrin adaptor complex Ubiquitin_Proteasome_system, DUB: JAMM Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family ATP binding cytosol Lysosome Aminoacyl-tRNA biosynthesis Homologous recombination 2-alkenal reductase [NAD(P)] activity vesicle-mediated transport intracellular protein transport Spliceosome | details |
| CFinderADM002248 | condensed chromosome kinetochore nuclear pore outer ring chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore distribution Transcription_related, Transcription regulator: SWI/SNF-BAF60b RNA export from nucleus nucleocytoplasmic transporter activity structural constituent of nuclear pore protein import into nucleus translational initiation translation initiation factor activity membrane RNA transport regulation of transcription, DNA-templated chloroplast | details |
| CFinderADM002265 | regulation of production of siRNA involved in chromatin silencing by small RNA DNA-directed RNA polymerase V complex mismatch repair complex RNA-directed DNA methylation Mismatch repair mismatched DNA binding protein homodimerization activity | details |
| CFinderADM002266 | regulation of production of siRNA involved in chromatin silencing by small RNA DNA-directed RNA polymerase V complex mismatch repair complex RNA-directed DNA methylation Mismatch repair mismatched DNA binding protein homodimerization activity | details |
Expression profiles
 Show details about module gene expression profiling |