CFinderADM002248's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| condensed chromosome kinetochore | 1.03E-05 | GO:0000777 |
| nuclear pore outer ring | 1.28E-05 | GO:0031080 |
| chromatin organization | 1.79E-05 | GO:0006325 |
| transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | 1.79E-05 | GO:0000972 |
| nuclear pore distribution | 1.79E-05 | GO:0031081 |
| Transcription_related, Transcription regulator: SWI/SNF-BAF60b | 1.84E-05 | TF family |
| RNA export from nucleus | 3.22E-05 | GO:0006405 |
| nucleocytoplasmic transporter activity | 4.50E-05 | GO:0005487 |
| structural constituent of nuclear pore | 4.50E-05 | GO:0017056 |
| protein import into nucleus | 0.000180449 | GO:0006606 |
| translational initiation | 0.00078453 | GO:0006413 |
| translation initiation factor activity | 0.001172293 | GO:0003743 |
| membrane | 0.001266485 | GO:0016020 |
| RNA transport | 0.002712166 | KEGG pathway |
| regulation of transcription, DNA-templated | 0.032848927 | GO:0006355 |
| chloroplast | 0.03656336 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001100 | AT5G04070 (3.00E-24) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T006623 | AT1G19715 (5.00E-12) | Mannose-binding lectin superfamily protein |
| CRO_T014466 | AT1G71350 (0) | eukaryotic translation initiation factor SUI1 family protein |
| CRO_T019976 | AT2G05120 (0) | Nucleoporin, Nup133/Nup155-like |
| CRO_T026183 | AT5G23950 (1.00E-16) | Calcium-dependent lipid-binding (CaLB domain) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000327 | GTPase activity GTP binding formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000672 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 equatorial microtubule organizing center mismatch repair complex gamma-tubulin small complex centrosome duplication nucleotide-sugar transport meiotic nuclear division mitotic spindle assembly interphase microtubule nucleation by interphase microtubule organizing center gamma-tubulin binding microtubule minus-end binding beta-N-acetylhexosaminidase activity cullin-RING ubiquitin ligase complex nucleotide-excision repair Mismatch repair mismatched DNA binding red, far-red light phototransduction cytoplasmic microtubule organization nucleus Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase structural constituent of cytoskeleton calcium-dependent protein serine/threonine kinase activity damaged DNA binding calmodulin-dependent protein kinase activity UDP-glucosyltransferase activity ATP-dependent peptidase activity Transcription_related, Transcription factor: ERF protein autophosphorylation abscisic acid-activated signaling pathway peptidyl-serine phosphorylation proteasome-mediated ubiquitin-dependent protein catabolic process multicellular organism development microtubule plasma membrane Amino sugar and nucleotide sugar metabolism Plant-pathogen interaction Ubiquitin mediated proteolysis calmodulin binding intracellular signal transduction protein ubiquitination Golgi apparatus calcium ion binding | details |
| CFinderADM001126 | Cell cycle nuclear origin of replication recognition complex hydrolase activity Ribosome biogenesis in eukaryotes DNA replication kinase activity metabolic process phosphorylation transferase activity nucleic acid binding | details |
| CFinderADM001195 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc condensed chromosome kinetochore nuclear pore distribution transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery chromatin organization oligosaccharide metabolic process nuclear pore outer ring RNA export from nucleus beta-N-acetylhexosaminidase activity mannosyl-oligosaccharide glucosidase activity nucleocytoplasmic transporter activity protein N-linked glycosylation structural constituent of nuclear pore protein import into nucleus UDP-glucosyltransferase activity N-Glycan biosynthesis Amino sugar and nucleotide sugar metabolism GTPase activity RNA transport GTP binding endoplasmic reticulum membrane carbohydrate metabolic process | details |
| CFinderADM001653 | single organismal cell-cell adhesion pectic galactan metabolic process sphingomyelin phosphodiesterase D activity glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process Transcription_related, Transcription regulator: SWI/SNF-BAF60b glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis serine-type carboxypeptidase activity lyase activity translational initiation response to abscisic acid proteolysis involved in cellular protein catabolic process translation initiation factor activity trans-Golgi network endosome vacuole integral component of membrane DNA binding | details |
| CFinderADM001805 | phosphatidylethanolamine biosynthesis I negative regulation of reductive pentose-phosphate cycle Ubiquitin_Proteasome_system, E3 adaptor: DDB1 red, far-red light phototransduction nucleotide-excision repair protein complex cullin-RING ubiquitin ligase complex Ran GTPase binding damaged DNA binding proteasome-mediated ubiquitin-dependent protein catabolic process methyltransferase activity Ubiquitin mediated proteolysis cellular process RNA transport intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: DWD protein ubiquitination methylation intracellular | details |
| CFinderADM001822 | Pyrimidine metabolism uracil degradation I (reductive) beta-ureidopropionase activity dCMP deaminase activity pyrimidine nucleotide metabolic process uracil catabolic process Transcription_related, Transcription regulator: SWI/SNF-BAF60b Transcription_related, Transcription factor: C2C2-GATA Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) zinc ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc translational initiation intracellular part integral component of membrane translation initiation factor activity cellular process sequence-specific DNA binding Golgi apparatus transcription factor activity, sequence-specific DNA binding protein serine/threonine kinase activity | details |
| CFinderADM001871 | condensed chromosome kinetochore EKC/KEOPS complex nuclear pore distribution tRNA threonylcarbamoyladenosine modification nuclear pore outer ring transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery chromatin organization RNA export from nucleus glycerol transport water transport cellular water homeostasis structural constituent of nuclear pore nucleocytoplasmic transporter activity protein import into nucleus glycerol channel activity water channel activity ion transmembrane transport RNA secondary structure unwinding ATP-dependent RNA helicase activity RNA transport vacuole protein dimerization activity integral component of plasma membrane plasmodesma hydrolase activity nucleic acid binding regulation of transcription, DNA-templated | details |
| CFinderADM001933 | tRNA methylation UFM1 hydrolase activity tRNA (guanine) methyltransferase activity tRNA (guanine(37)-N(1))-methyltransferase activity defense response to bacterium cytosol mitochondrial matrix ATPase activity RNA binding | details |
| CFinderADM002039 | transferase activity, transferring pentosyl groups phenylalanyl-tRNA aminoacylation Transcription_related, Transcription factor: NF-YB phenylalanine-tRNA ligase complex RNA binding phenylalanine-tRNA ligase activity L-glutamine degradation I L-histidine biosynthesis fatty-acyl-CoA binding cellular amino acid biosynthetic process Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids protein heterodimerization activity ATP-dependent RNA helicase activity magnesium ion binding nucleus ATP binding | details |
Expression profiles
 Show details about module gene expression profiling |