CFinderADM000717's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: Rcd1-like | 1.02E-05 | TF family |
| response to far red light | 8.21E-05 | GO:0010218 |
| red, far-red light phototransduction | 8.21E-05 | GO:0009585 |
| negative regulation of translation | 8.21E-05 | GO:0017148 |
| positive regulation of circadian rhythm | 8.21E-05 | GO:0042753 |
| Circadian rhythm | 8.21E-05 | KEGG pathway |
| CCR4-NOT core complex | 9.01E-05 | GO:0030015 |
| proteasome core complex | 0.000141368 | GO:0005839 |
| threonine-type endopeptidase activity | 0.000320798 | GO:0004298 |
| cytoplasmic mRNA processing body | 0.000329209 | GO:0000932 |
| positive regulation of transcription, DNA-templated | 0.000930806 | GO:0045893 |
| response to stress | 0.001456176 | GO:0006950 |
| proteolysis involved in cellular protein catabolic process | 0.001601082 | GO:0051603 |
| Proteasome | 0.001815486 | KEGG pathway |
| RNA degradation | 0.00231742 | KEGG pathway |
| Transcription_related, Transcription factor: FAR1 | 0.002570936 | TF family |
| nucleus | 0.003684731 | GO:0005634 |
| Spliceosome | 0.007758459 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.008347958 | ubs family |
| transcription factor activity, sequence-specific DNA binding | 0.018210654 | GO:0003700 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005825 | AT1G09740 (1.00E-15) | Adenine nucleotide alpha hydrolases-like superfamily protein |
| CRO_T007476 | AT2G32550 (9.00E-22) | Cell differentiation, Rcd1-like protein |
| CRO_T010195 | AT5G07960 (8.00E-37) | unknown protein |
| CRO_T017600 | AT4G32551 (3.00E-19) | LUG|LEUNIG; RON2|ROTUNDA 2 |
| CRO_T024294 | AT2G43280 (4.00E-14) | Far-red impaired responsive (FAR1) family protein |
| CRO_T028507 | AT4G31300 (8.00E-20) | PBA1|N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000718 | Transcription_related, Transcription regulator: Rcd1-like Ubiquitin_Proteasome_system, E3 adaptor: DWD CCR4-NOT core complex maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) negative regulation of translation Cellular senescence cytoplasmic translation cytoplasmic mRNA processing body poly(A) RNA binding RNA degradation cytosolic large ribosomal subunit Ribosome nucleic acid binding structural constituent of ribosome | details |
| CFinderADM001182 | proteasome regulatory particle, lid subcomplex nuclear cap binding complex Golgi medial cisterna RNA cap binding cis-Golgi network organic acid transmembrane transporter activity S-methyl-5-thioribose-1-phosphate isomerase activity guanyl-nucleotide exchange factor activity eukaryotic translation initiation factor 2B complex positive regulation of circadian rhythm response to far red light regulation of vesicle targeting, to, from or within Golgi proteasome assembly organic acid transmembrane transport mRNA cis splicing, via spliceosome Circadian rhythm L-methionine biosynthetic process from methylthioadenosine red, far-red light phototransduction structural molecule activity intra-Golgi vesicle-mediated transport regulation of translational initiation vesicle fusion ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding Transcription_related, Transcription factor: FAR1 positive regulation of GTPase activity positive regulation of transcription, DNA-templated SNARE complex protein transport translational initiation Proteasome SNARE interactions in vesicular transport ubiquitin-dependent protein catabolic process Golgi membrane translation initiation factor activity nucleus integral component of plasma membrane RNA transport Spliceosome transcription factor activity, sequence-specific DNA binding nucleotide binding | details |
| CFinderADM001227 | response to far red light positive regulation of circadian rhythm Circadian rhythm red, far-red light phototransduction biological regulation Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription factor: G2-like positive regulation of transcription, DNA-templated Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: FAR1 transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001496 | tRNA (m1A) methyltransferase complex positive regulation of circadian rhythm response to far red light Circadian rhythm peptidyl-lysine monomethylation red, far-red light phototransduction tRNA methylation protein-lysine N-methyltransferase activity positive regulation of transcription, DNA-templated Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: FAR1 Transcription_related, Transcription factor: MYB transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001775 | positive regulation of circadian rhythm response to far red light Circadian rhythm peptidyl-lysine monomethylation red, far-red light phototransduction clathrin adaptor complex substrate-specific transmembrane transporter activity protein-lysine N-methyltransferase activity ATP-dependent helicase activity DNA recombination Transcription_related, Transcription regulator: SET Lysosome carbohydrate transport positive regulation of transcription, DNA-templated RNA degradation Transcription_related, Transcription factor: FAR1 vesicle-mediated transport 2-alkenal reductase [NAD(P)] activity intracellular protein transport transmembrane transport transcription factor activity, sequence-specific DNA binding nucleic acid binding | details |
Expression profiles
 Show details about module gene expression profiling |