CFinderADM001775's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| positive regulation of circadian rhythm | 9.96E-05 | GO:0042753 |
| response to far red light | 9.96E-05 | GO:0010218 |
| Circadian rhythm | 0.000106709 | KEGG pathway |
| peptidyl-lysine monomethylation | 0.000110925 | GO:0018026 |
| red, far-red light phototransduction | 0.000110925 | GO:0009585 |
| clathrin adaptor complex | 0.000155223 | GO:0030131 |
| substrate-specific transmembrane transporter activity | 0.000216285 | GO:0022891 |
| protein-lysine N-methyltransferase activity | 0.000216285 | GO:0016279 |
| ATP-dependent helicase activity | 0.000216285 | GO:0008026 |
| DNA recombination | 0.000384368 | GO:0006310 |
| Transcription_related, Transcription regulator: SET | 0.000410442 | TF family |
| Lysosome | 0.000433828 | KEGG pathway |
| carbohydrate transport | 0.000502329 | GO:0008643 |
| positive regulation of transcription, DNA-templated | 0.000798821 | GO:0045893 |
| RNA degradation | 0.000898409 | KEGG pathway |
| Transcription_related, Transcription factor: FAR1 | 0.000996848 | TF family |
| vesicle-mediated transport | 0.002056746 | GO:0016192 |
| 2-alkenal reductase [NAD(P)] activity | 0.003073478 | GO:0032440 |
| intracellular protein transport | 0.004746777 | GO:0006886 |
| transmembrane transport | 0.016876785 | GO:0055085 |
| transcription factor activity, sequence-specific DNA binding | 0.017310458 | GO:0003700 |
| nucleic acid binding | 0.02581125 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005576 | AT2G18850 (2.00E-141) | SET domain-containing protein |
| CRO_T008130 | - | - |
| CRO_T019954 | AT1G67300 (3.00E-175) | Major facilitator superfamily protein |
| CRO_T024294 | AT2G43280 (4.00E-14) | Far-red impaired responsive (FAR1) family protein |
| CRO_T031257 | AT4G24550 (2.00E-152) | AP4M|adaptor protein-4 mu-adaptin |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000717 | Transcription_related, Transcription regulator: Rcd1-like response to far red light red, far-red light phototransduction negative regulation of translation positive regulation of circadian rhythm Circadian rhythm CCR4-NOT core complex proteasome core complex threonine-type endopeptidase activity cytoplasmic mRNA processing body positive regulation of transcription, DNA-templated response to stress proteolysis involved in cellular protein catabolic process Proteasome RNA degradation Transcription_related, Transcription factor: FAR1 nucleus Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM000760 | chromosome condensation condensed chromosome cytoskeletal part eukaryotic translation initiation factor 2B complex microtubule cytoskeleton guanyl-nucleotide exchange factor activity S-methyl-5-thioribose-1-phosphate isomerase activity L-methionine biosynthetic process from methylthioadenosine ATP-dependent helicase activity Cell cycle - yeast mitotic nuclear division DNA recombination regulation of translational initiation positive regulation of GTPase activity translational initiation regulation of cellular process RNA degradation translation initiation factor activity RNA transport nucleic acid binding | details |
| CFinderADM001182 | proteasome regulatory particle, lid subcomplex nuclear cap binding complex Golgi medial cisterna RNA cap binding cis-Golgi network organic acid transmembrane transporter activity S-methyl-5-thioribose-1-phosphate isomerase activity guanyl-nucleotide exchange factor activity eukaryotic translation initiation factor 2B complex positive regulation of circadian rhythm response to far red light regulation of vesicle targeting, to, from or within Golgi proteasome assembly organic acid transmembrane transport mRNA cis splicing, via spliceosome Circadian rhythm L-methionine biosynthetic process from methylthioadenosine red, far-red light phototransduction structural molecule activity intra-Golgi vesicle-mediated transport regulation of translational initiation vesicle fusion ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding Transcription_related, Transcription factor: FAR1 positive regulation of GTPase activity positive regulation of transcription, DNA-templated SNARE complex protein transport translational initiation Proteasome SNARE interactions in vesicular transport ubiquitin-dependent protein catabolic process Golgi membrane translation initiation factor activity nucleus integral component of plasma membrane RNA transport Spliceosome transcription factor activity, sequence-specific DNA binding nucleotide binding | details |
| CFinderADM001227 | response to far red light positive regulation of circadian rhythm Circadian rhythm red, far-red light phototransduction biological regulation Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription factor: G2-like positive regulation of transcription, DNA-templated Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: FAR1 transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001496 | tRNA (m1A) methyltransferase complex positive regulation of circadian rhythm response to far red light Circadian rhythm peptidyl-lysine monomethylation red, far-red light phototransduction tRNA methylation protein-lysine N-methyltransferase activity positive regulation of transcription, DNA-templated Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: FAR1 Transcription_related, Transcription factor: MYB transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001916 | protein folding in endoplasmic reticulum ER membrane protein complex Transcription_related, Transcription factor: C2C2-GATA clathrin adaptor complex Lysosome cytosol ribosomal large subunit binding iron-sulfur cluster assembly iron-sulfur cluster binding ribosome binding chloroplast organization vesicle-mediated transport ATPase activity intracellular protein transport plasmodesma chloroplast stroma sequence-specific DNA binding GTP binding iron ion binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated | details |
| CFinderADM001944 | plastid chromosome nucleic acid binding Transcription_related, Transcription regulator: SET substrate-specific transmembrane transporter activity 3'-5' exonuclease activity RNA secondary structure unwinding rRNA processing carbohydrate transport nucleic acid phosphodiester bond hydrolysis ATP-dependent RNA helicase activity 2-alkenal reductase [NAD(P)] activity transmembrane transport | details |
| CFinderADM001999 | catalytic complex intracellular non-membrane-bounded organelle nuclear lumen 1-aminocyclopropane-1-carboxylate oxidase activity developmental process involved in reproduction fruit ripening ethylene biosynthetic process ethylene biosynthesis I (plants) peptidyl-lysine monomethylation protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET L-ascorbic acid binding Fanconi anemia pathway Cysteine and methionine metabolism response to stimulus metal ion transport metal ion binding multicellular organism development dioxygenase activity cellular process | details |
| CFinderADM002058 | ethylene biosynthetic process fruit ripening 1-aminocyclopropane-1-carboxylate oxidase activity peptidyl-lysine monomethylation ethylene biosynthesis I (plants) protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET L-ascorbic acid binding Cysteine and methionine metabolism dioxygenase activity | details |
| CFinderADM002089 | unfolded protein binding protein folding clathrin adaptor complex Ubiquitin_Proteasome_system, DUB: JAMM Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family ATP binding cytosol Lysosome Aminoacyl-tRNA biosynthesis Homologous recombination 2-alkenal reductase [NAD(P)] activity vesicle-mediated transport intracellular protein transport Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |