CFinderADM001496's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| tRNA (m1A) methyltransferase complex | 2.42E-05 | GO:0031515 |
| positive regulation of circadian rhythm | 5.00E-05 | GO:0042753 |
| response to far red light | 5.00E-05 | GO:0010218 |
| Circadian rhythm | 5.36E-05 | KEGG pathway |
| peptidyl-lysine monomethylation | 5.57E-05 | GO:0018026 |
| red, far-red light phototransduction | 5.57E-05 | GO:0009585 |
| tRNA methylation | 9.10E-05 | GO:0030488 |
| protein-lysine N-methyltransferase activity | 0.000155223 | GO:0016279 |
| positive regulation of transcription, DNA-templated | 0.000458589 | GO:0045893 |
| Transcription_related, Transcription regulator: SET | 0.00072402 | TF family |
| Transcription_related, Transcription factor: FAR1 | 0.001589475 | TF family |
| Transcription_related, Transcription factor: MYB | 0.001589475 | TF family |
| transcription factor activity, sequence-specific DNA binding | 0.018555111 | GO:0003700 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001785 | AT2G45730 (7.00E-136) | eukaryotic initiation factor 3 gamma subunit family protein |
| CRO_T005576 | AT2G18850 (2.00E-141) | SET domain-containing protein |
| CRO_T016750 | AT5G06100 (6.00E-26) | MYB33|myb domain protein 33 |
| CRO_T020499 | AT5G55960 (0) | unknown protein |
| CRO_T024294 | AT2G43280 (4.00E-14) | Far-red impaired responsive (FAR1) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000717 | Transcription_related, Transcription regulator: Rcd1-like response to far red light red, far-red light phototransduction negative regulation of translation positive regulation of circadian rhythm Circadian rhythm CCR4-NOT core complex proteasome core complex threonine-type endopeptidase activity cytoplasmic mRNA processing body positive regulation of transcription, DNA-templated response to stress proteolysis involved in cellular protein catabolic process Proteasome RNA degradation Transcription_related, Transcription factor: FAR1 nucleus Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001182 | proteasome regulatory particle, lid subcomplex nuclear cap binding complex Golgi medial cisterna RNA cap binding cis-Golgi network organic acid transmembrane transporter activity S-methyl-5-thioribose-1-phosphate isomerase activity guanyl-nucleotide exchange factor activity eukaryotic translation initiation factor 2B complex positive regulation of circadian rhythm response to far red light regulation of vesicle targeting, to, from or within Golgi proteasome assembly organic acid transmembrane transport mRNA cis splicing, via spliceosome Circadian rhythm L-methionine biosynthetic process from methylthioadenosine red, far-red light phototransduction structural molecule activity intra-Golgi vesicle-mediated transport regulation of translational initiation vesicle fusion ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding Transcription_related, Transcription factor: FAR1 positive regulation of GTPase activity positive regulation of transcription, DNA-templated SNARE complex protein transport translational initiation Proteasome SNARE interactions in vesicular transport ubiquitin-dependent protein catabolic process Golgi membrane translation initiation factor activity nucleus integral component of plasma membrane RNA transport Spliceosome transcription factor activity, sequence-specific DNA binding nucleotide binding | details |
| CFinderADM001227 | response to far red light positive regulation of circadian rhythm Circadian rhythm red, far-red light phototransduction biological regulation Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription factor: G2-like positive regulation of transcription, DNA-templated Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: FAR1 transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001775 | positive regulation of circadian rhythm response to far red light Circadian rhythm peptidyl-lysine monomethylation red, far-red light phototransduction clathrin adaptor complex substrate-specific transmembrane transporter activity protein-lysine N-methyltransferase activity ATP-dependent helicase activity DNA recombination Transcription_related, Transcription regulator: SET Lysosome carbohydrate transport positive regulation of transcription, DNA-templated RNA degradation Transcription_related, Transcription factor: FAR1 vesicle-mediated transport 2-alkenal reductase [NAD(P)] activity intracellular protein transport transmembrane transport transcription factor activity, sequence-specific DNA binding nucleic acid binding | details |
| CFinderADM001814 | mitotic DNA replication initiation acyl binding cell tip growth double-strand break repair via break-induced replication replication fork protection complex GINS complex tRNA (m1A) methyltransferase complex protein homooligomerization 3'-5' DNA helicase activity Cell cycle - Caulobacter tRNA methylation protein-cysteine S-palmitoyltransferase activity DNA duplex unwinding endosome trans-Golgi network binding | details |
| CFinderADM001999 | catalytic complex intracellular non-membrane-bounded organelle nuclear lumen 1-aminocyclopropane-1-carboxylate oxidase activity developmental process involved in reproduction fruit ripening ethylene biosynthetic process ethylene biosynthesis I (plants) peptidyl-lysine monomethylation protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET L-ascorbic acid binding Fanconi anemia pathway Cysteine and methionine metabolism response to stimulus metal ion transport metal ion binding multicellular organism development dioxygenase activity cellular process | details |
| CFinderADM002058 | ethylene biosynthetic process fruit ripening 1-aminocyclopropane-1-carboxylate oxidase activity peptidyl-lysine monomethylation ethylene biosynthesis I (plants) protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET L-ascorbic acid binding Cysteine and methionine metabolism dioxygenase activity | details |
Expression profiles
 Show details about module gene expression profiling |