CFinderADM000757's detailed annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Phospholipase D signaling pathway 6.55E-06KEGG pathway
nuclear polyadenylation-dependent ncRNA catabolic process7.12E-06GO:0071046
snRNA 3'-end processing7.12E-06GO:0034472
rRNA metabolic process7.12E-06GO:0016072
Golgi-associated vesicle membrane8.94E-06GO:0030660
integral component of cytoplasmic side of endoplasmic reticulum membrane8.94E-06GO:0071458
integral component of lumenal side of endoplasmic reticulum membrane8.94E-06GO:0071556
exosome (RNase complex)8.94E-06GO:0000178
aspartic endopeptidase activity, intramembrane cleaving1.15E-05GO:0042500
lysosomal membrane1.50E-05GO:0005765
homoserine dehydrogenase activity1.62E-05GO:0004412
membrane protein proteolysis1.78E-05GO:0033619
nuclear-transcribed mRNA catabolic process, exonucleolytic2.14E-05GO:0000291
threonine biosynthetic process2.49E-05GO:0009088
isoleucine biosynthetic process3.66E-05GO:0009097
methionine biosynthetic process4.00E-05GO:0009086
signal peptide processing7.19E-05GO:0006465
RNA degradation 0.000898409KEGG pathway
nucleic acid phosphodiester bond hydrolysis0.001291429GO:0090305
small GTPase mediated signal transduction0.001459826GO:0007264
endosome0.002690418GO:0005768
GTP binding0.003384978GO:0005525
cytosol0.047219126GO:0005829

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T002193AT4G03560 (6.00E-04)ATCCH1|CALCIUM CHANNEL 1; ATTPC1|two-pore channel 1; FOU2|FATTY ACID OXYGENATION UPREGULATED 2
CRO_T004103AT3G07750 (5.00E-39)3'-5'-exoribonuclease family protein
CRO_T005200--
CRO_T022196AT2G15310 (7.00E-15)ARFB1A|ADP-ribosylation factor B1A
CRO_T032980AT4G33410 (3.00E-21)ATSPPL1|SIGNAL PEPTIDE PEPTIDASE-LIKE 1

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderADM000002Transcription_related, Transcription factor: M-type
phosphatidylethanolamine binding
L-alanine biosynthesis III
nickel cation binding
photoperiodism, flowering
molybdenum cofactor biosynthesis
transferase activity, transferring alkyl or aryl (other than methyl) groups
regulation of flower development
nitrogen compound metabolic process
Circadian rhythm - plant
Transcription_related, Transcription factor: G2-like
transferase activity, transferring hexosyl groups
Transcription_related, Transcription factor: MYB-related
DNA-directed RNA polymerase activity
Terpenoid backbone biosynthesis
Transcription_related, Transcription factor: B3
multicellular organism development
Transcription_related, Transcription factor: NAC
binding
Transcription_related, Transcription factor: FAR1
transcription, DNA-templated
GTPase activity
Purine metabolism
details
CFinderADM000881nuclear polyadenylation-dependent ncRNA catabolic process
snRNA 3'-end processing
rRNA metabolic process
exosome (RNase complex)
nuclear-transcribed mRNA catabolic process, exonucleolytic
Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII
transmembrane receptor protein tyrosine kinase activity
glucan endo-1,3-beta-D-glucosidase activity
adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57
hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc
RNA degradation
peptidyl-tyrosine phosphorylation
nucleic acid phosphodiester bond hydrolysis
polysaccharide binding
2-alkenal reductase [NAD(P)] activity
anchored component of plasma membrane
carbohydrate metabolic process
details
CFinderADM001023Phospholipase D signaling pathway
aspartic endopeptidase activity, intramembrane cleaving
integral component of cytoplasmic side of endoplasmic reticulum membrane
Golgi-associated vesicle membrane
integral component of lumenal side of endoplasmic reticulum membrane
homoserine dehydrogenase activity
lysosomal membrane
membrane protein proteolysis
threonine biosynthetic process
isoleucine biosynthetic process
methionine biosynthetic process
signal peptide processing
small GTPase mediated signal transduction
endosome
GTP binding
details
CFinderADM001270protein targeting
glucose catabolic process
membrane protein proteolysis
integral component of lumenal side of endoplasmic reticulum membrane
integral component of cytoplasmic side of endoplasmic reticulum membrane
Golgi-associated vesicle membrane
Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII
lysosomal membrane
Transcriptional misregulation in cancers
aspartic endopeptidase activity, intramembrane cleaving
signal peptide processing
transmembrane receptor protein tyrosine kinase activity
adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57
nucleosome
peptidyl-tyrosine phosphorylation
polysaccharide binding
protein heterodimerization activity
2-alkenal reductase [NAD(P)] activity
endosome
integral component of membrane
DNA binding
details

Expression profiles


Show details about module gene expression profiling
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