CFinderADM001249's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Pwp2p-containing subcomplex of 90S preribosome | 6.44E-05 | GO:0034388 |
| nucleotide-excision repair | 0.000126439 | GO:0006289 |
| snoRNA binding | 0.000172685 | GO:0030515 |
| damaged DNA binding | 0.000172685 | GO:0003684 |
| isomerase activity | 0.000255091 | GO:0016853 |
| photosynthesis, light reaction | 0.000265062 | GO:0019684 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.000428337 | GO:0000462 |
| membrane part | 0.000681338 | GO:0044425 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.000943005 | GO:0043161 |
| Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | 0.000994379 | ubs family |
| small-subunit processome | 0.001301252 | GO:0032040 |
| Photosynthesis | 0.002436229 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.002436229 | KEGG pathway |
| plastid | 0.002585854 | GO:0009536 |
| protein folding | 0.002664767 | GO:0006457 |
| Protein processing in endoplasmic reticulum | 0.008804647 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010409 | AT4G28200 (7.00E-129) | unknown protein |
| CRO_T013311 | ATCG00680 (3.00E-18) | PSBB|photosystem II reaction center protein B |
| CRO_T021786 | AT2G26200 (8.00E-63) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T031685 | - | - |
| CRO_T033754 | AT1G16190 (8.00E-47) | RAD23A|RADIATION SENSITIVE23A |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000775 | metalloendopeptidase activity small GTPase mediated signal transduction Protein processing in endoplasmic reticulum intracellular GTP binding proteolysis Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001250 | Pwp2p-containing subcomplex of 90S preribosome nucleotide-excision repair snoRNA binding damaged DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) proteasome-mediated ubiquitin-dependent protein catabolic process small-subunit processome Ribosome biogenesis in eukaryotes Protein processing in endoplasmic reticulum | details |
| CFinderADM001598 | Estrogen signaling pathway signal recognition particle binding oxidized purine nucleobase lesion DNA N-glycosylase activity ATG1/ULK1 kinase complex signal recognition particle, endoplasmic reticulum targeting 7S RNA binding FK506 binding SRP-dependent cotranslational protein targeting to membrane autophagy photosynthesis, light reaction chaperone-mediated protein folding Autophagy - animal damaged DNA binding protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity membrane part Protein export Ubiquitin_Proteasome_system, E3 adaptor: SKP1 cytosolic small ribosomal subunit DNA repair Photosynthesis plastid endoplasmic reticulum membrane Ribosome RNA binding translation structural constituent of ribosome | details |
| CFinderADM001810 | small GTPase mediated signal transduction intracellular GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001885 | NEDD8 transferase activity lignin metabolic process ATG1/ULK1 kinase complex protein neddylation autophagy plant-type secondary cell wall biogenesis Ubiquitin_Proteasome_system, E2: UBC Autophagy - animal brassinosteroid biosynthetic process unidimensional cell growth Steroid biosynthesis oxidoreductase activity, acting on CH-OH group of donors ubiquitin protein ligase binding Ubiquitin mediated proteolysis calmodulin binding flavin adenine dinucleotide binding ubiquitin protein ligase activity vacuolar membrane nucleotide binding | details |
| CFinderADM002019 | cytidine to uridine editing Transcription_related, Transcription factor: Alfin-like nucleotide-excision repair hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc damaged DNA binding histone binding beta-galactosidase activity Galactose metabolism proteasome-mediated ubiquitin-dependent protein catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein processing in endoplasmic reticulum carbohydrate metabolic process nucleic acid binding regulation of transcription, DNA-templated | details |
| CFinderADM002079 | mRNA metabolic process mitotic sister chromatid cohesion gene expression Cell cycle - yeast single organism reproductive process regulation of gene expression large ribosomal subunit rRNA binding chromatin binding metalloendopeptidase activity intracellular part mRNA surveillance pathway cytosolic large ribosomal subunit nucleolus Ribosome proteolysis Ubiquitin_Proteasome_system, E3: RING translation binding structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |