CFinderADM001423's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| structural constituent of ribosome | 2.62E-08 | GO:0003735 |
| cytosolic small ribosomal subunit | 1.02E-07 | GO:0022627 |
| nuclear-transcribed mRNA catabolic process | 1.87E-05 | GO:0000956 |
| positive regulation of translational fidelity | 4.67E-05 | GO:0045903 |
| translation | 6.04E-05 | GO:0006412 |
| large ribosomal subunit rRNA binding | 0.000111192 | GO:0070180 |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.000192773 | kinase family |
| ribosomal large subunit assembly | 0.000503589 | GO:0000027 |
| cytoplasmic translation | 0.000503589 | GO:0002181 |
| preribosome, large subunit precursor | 0.000565756 | GO:0030687 |
| rRNA processing | 0.000887687 | GO:0006364 |
| rRNA binding | 0.002626445 | GO:0019843 |
| intracellular signal transduction | 0.003067708 | GO:0035556 |
| cytosolic large ribosomal subunit | 0.004715859 | GO:0022625 |
| nucleolus | 0.007200114 | GO:0005730 |
| Ribosome | 0.013599818 | KEGG pathway |
| protein serine/threonine kinase activity | 0.042925796 | GO:0004674 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000729 | AT2G38800 (9.00E-12) | Plant calmodulin-binding protein-related |
| CRO_T003762 | AT1G07210 (2.00E-39) | Ribosomal protein S18 |
| CRO_T009019 | AT1G25260 (3.00E-92) | Ribosomal protein L10 family protein |
| CRO_T012214 | - | - |
| CRO_T019187 | AT5G39850 (4.00E-95) | Ribosomal protein S4 |
| CRO_T024659 | AT5G47750 (2.00E-158) | D6PKL2|D6 protein kinase like 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000573 | 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex Riboflavin metabolism riboflavin biosynthetic process flavin biosynthesis I (bacteria and plants) Transcription_related, Transcription factor: WRKY cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis S-adenosylmethionine-dependent methyltransferase activity trans-Golgi network vacuolar membrane endosome methylation transferase activity chloroplast stroma | details |
| CFinderADM000794 | Measles Herpes simplex infection positive regulation of translational fidelity ATP-dependent chromatin remodeling organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic DNA-dependent ATPase activity Transcription_related, Transcription regulator: SNF2 mitochondrial matrix cytosolic small ribosomal subunit chromatin binding helicase activity rRNA binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Ribosome translation transferase activity structural constituent of ribosome regulation of transcription, DNA-templated | details |
| CFinderADM000960 | methylation zinc ion binding S-adenosylmethionine-dependent methyltransferase activity methyltransferase activity endosome integral component of membrane vacuolar membrane trans-Golgi network Golgi apparatus binding | details |
| CFinderADM001422 | mRNA splicing, via spliceosome Spliceosome mannitol biosynthesis Transcription_related, Transcription factor: NF-YC maturation of SSU-rRNA maturation of LSU-rRNA box C/D snoRNP complex U4/U6 x U5 tri-snRNP complex precatalytic spliceosome catalytic step 2 spliceosome microtubule-severing ATPase activity Pentose and glucuronate interconversions small-subunit processome protein heterodimerization activity cytosolic large ribosomal subunit Ubiquitin_Proteasome_system, E3 adaptor: DWD translation RNA binding oxidoreductase activity | details |
| CFinderADM002136 | plastoquinol-9 biosynthesis I nuclear-transcribed mRNA catabolic process protein phosphatase type 2A regulator activity large ribosomal subunit rRNA binding regulation of protein phosphatase type 2A activity protein phosphatase type 2A complex cytoplasmic translation ribosomal large subunit assembly preribosome, large subunit precursor rRNA processing mRNA surveillance pathway signal transduction cytosolic large ribosomal subunit nucleolus chloroplast envelope structural constituent of ribosome | details |
| CFinderADM002174 | nuclear-transcribed mRNA catabolic process riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity plastoquinol-9 biosynthesis I Riboflavin metabolism flavin biosynthesis I (bacteria and plants) riboflavin biosynthetic process large ribosomal subunit rRNA binding cytoplasmic translation ribosomal large subunit assembly rRNA processing preribosome, large subunit precursor unfolded protein binding protein folding cytosolic large ribosomal subunit nucleolus chloroplast envelope chloroplast stroma transferase activity structural constituent of ribosome | details |
| CFinderADM002195 | nuclear-transcribed mRNA catabolic process proteasome regulatory particle, lid subcomplex deoxyribonucleoside diphosphate metabolic process proteasome assembly Transcription_related, Transcription factor: G2-like deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase complex regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor large ribosomal subunit rRNA binding histone acetyltransferase activity structural molecule activity histone acetylation cytoplasmic translation ribosomal large subunit assembly preribosome, large subunit precursor Proteasome rRNA processing multicellular organism development ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction nucleus cytosolic large ribosomal subunit Purine metabolism nucleolus GTP binding intracellular structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |