CFinderADM000807's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| purine nucleotide biosynthetic process | 7.07E-07 | GO:0006164 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase activity | 9.82E-07 | GO:0004643 |
| IMP cyclohydrolase activity | 9.82E-07 | GO:0003937 |
| exon-exon junction complex | 2.36E-06 | GO:0035145 |
| inosine-5'-phosphate biosynthesis II | 6.60E-06 | plantCyc |
| Ribosome biogenesis in eukaryotes | 0.004167484 | KEGG pathway |
| Plant hormone signal transduction | 0.00501794 | KEGG pathway |
| Purine metabolism | 0.00501794 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.007086269 | ubs family |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.007086269 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008932 | AT5G11240 (9.00E-156) | transducin family protein / WD-40 repeat family protein |
| CRO_T015811 | AT4G24210 (1.00E-28) | SLY1|SLEEPY1 |
| CRO_T016657 | AT3G54680 (9.00E-10) | proteophosphoglycan-related |
| CRO_T029804 | AT2G35040 (0) | AICARFT/IMPCHase bienzyme family protein |
| CRO_T032087 | AT5G22120 (1.00E-83) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000175 | jasmonic acid and ethylene-dependent systemic resistance pathogenesis NAD-dependent histone deacetylase activity (H3-K14 specific) histone H3 deacetylation regulation of multicellular organismal development DNA mediated transformation Notch signaling pathway COPII vesicle coat SCF ubiquitin ligase complex negative regulation of transcription, DNA-templated histone acetylation ER to Golgi vesicle-mediated transport intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: F-box Plant hormone signal transduction Protein processing in endoplasmic reticulum transcription, DNA-templated zinc ion binding | details |
| CFinderADM000320 | protein ubiquitination ubiquitin-protein transferase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD Cell cycle Ubiquitin_Proteasome_system, E3: U-box ligase activity hydrolase activity | details |
| CFinderADM000331 | regulation of biological process single-organism process DNA replication mRNA surveillance pathway DNA-directed RNA polymerase activity transferase activity, transferring acyl groups Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated | details |
| CFinderADM000467 | clathrin vesicle coat pollen tube development polar nucleus fusion SNARE interactions in vesicular transport vesicle fusion exocytosis SNARE binding SNAP receptor activity protein transport plasma membrane vesicle-mediated transport SNARE complex Golgi membrane endomembrane system transferase activity, transferring glycosyl groups transporter activity Spliceosome endoplasmic reticulum membrane Golgi apparatus | details |
| CFinderADM000479 | tRNA (cytosine-5-)-methyltransferase activity tRNA methylation Homologous recombination helicase activity Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box RNA binding nucleic acid binding | details |
| CFinderADM000737 | Transcription_related, Transcription regulator: MBF1 L-leucine biosynthesis early endosome cell plate assembly hydro-lyase activity Mitophagy - animal cellular amino acid biosynthetic process Ubiquitin_Proteasome_system, DUB: USP 2-Oxocarboxylic acid metabolism 4 iron, 4 sulfur cluster binding isomerase activity trans-Golgi network Plant hormone signal transduction sequence-specific DNA binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM000808 | formation of glycosidic bonds, GlycosylTransferases: GTnc galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity system development exon-exon junction complex xylan biosynthesis translational initiation translation initiation factor activity Golgi apparatus hydrolase activity | details |
| CFinderADM001126 | Cell cycle nuclear origin of replication recognition complex hydrolase activity Ribosome biogenesis in eukaryotes DNA replication kinase activity metabolic process phosphorylation transferase activity nucleic acid binding | details |
| CFinderADM001482 | protein import into nucleus, translocation ribosomal protein import into nucleus protein import into nucleus, docking NLS-bearing protein import into nucleus nuclear membrane nuclear periphery ribosomal large subunit assembly nuclear localization sequence binding Ran GTPase binding Fanconi anemia pathway protein transporter activity RNA transport nucleolus RNA binding | details |
| CFinderADM002112 | clathrin vesicle coat mitotic spindle assembly checkpoint nuclear envelope Cell cycle vesicle-mediated transport endomembrane system Ubiquitin_Proteasome_system, E3 adaptor: DWD plasma membrane | details |
Expression profiles
 Show details about module gene expression profiling |