CFinderADM001482's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein import into nucleus, translocation | 4.14E-05 | GO:0000060 |
| ribosomal protein import into nucleus | 4.14E-05 | GO:0006610 |
| protein import into nucleus, docking | 4.21E-05 | GO:0000059 |
| NLS-bearing protein import into nucleus | 7.81E-05 | GO:0006607 |
| nuclear membrane | 9.64E-05 | GO:0031965 |
| nuclear periphery | 9.64E-05 | GO:0034399 |
| ribosomal large subunit assembly | 0.000173331 | GO:0000027 |
| nuclear localization sequence binding | 0.000215471 | GO:0008139 |
| Ran GTPase binding | 0.000215471 | GO:0008536 |
| Fanconi anemia pathway | 0.000229 | KEGG pathway |
| protein transporter activity | 0.000749439 | GO:0008565 |
| RNA transport | 0.003766897 | KEGG pathway |
| nucleolus | 0.006724807 | GO:0005730 |
| RNA binding | 0.011766995 | GO:0003723 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001551 | AT3G08943 (5.00E-63) | ARM repeat superfamily protein |
| CRO_T016657 | AT3G54680 (9.00E-10) | proteophosphoglycan-related |
| CRO_T018402 | AT1G15510 (3.00E-102) | ATECB2|ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2; ECB2|EARLY CHLOROPLAST BIOGENESIS2; VAC1|VANILLA CREAM 1 |
| CRO_T026571 | AT4G14970 (7.00E-72) | unknown protein |
| CRO_T026746 | AT3G15460 (2.00E-112) | Ribosomal RNA processing Brix domain protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000175 | jasmonic acid and ethylene-dependent systemic resistance pathogenesis NAD-dependent histone deacetylase activity (H3-K14 specific) histone H3 deacetylation regulation of multicellular organismal development DNA mediated transformation Notch signaling pathway COPII vesicle coat SCF ubiquitin ligase complex negative regulation of transcription, DNA-templated histone acetylation ER to Golgi vesicle-mediated transport intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: F-box Plant hormone signal transduction Protein processing in endoplasmic reticulum transcription, DNA-templated zinc ion binding | details |
| CFinderADM000320 | protein ubiquitination ubiquitin-protein transferase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD Cell cycle Ubiquitin_Proteasome_system, E3: U-box ligase activity hydrolase activity | details |
| CFinderADM000331 | regulation of biological process single-organism process DNA replication mRNA surveillance pathway DNA-directed RNA polymerase activity transferase activity, transferring acyl groups Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated | details |
| CFinderADM000467 | clathrin vesicle coat pollen tube development polar nucleus fusion SNARE interactions in vesicular transport vesicle fusion exocytosis SNARE binding SNAP receptor activity protein transport plasma membrane vesicle-mediated transport SNARE complex Golgi membrane endomembrane system transferase activity, transferring glycosyl groups transporter activity Spliceosome endoplasmic reticulum membrane Golgi apparatus | details |
| CFinderADM000479 | tRNA (cytosine-5-)-methyltransferase activity tRNA methylation Homologous recombination helicase activity Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box RNA binding nucleic acid binding | details |
| CFinderADM000807 | purine nucleotide biosynthetic process phosphoribosylaminoimidazolecarboxamide formyltransferase activity IMP cyclohydrolase activity exon-exon junction complex inosine-5'-phosphate biosynthesis II Ribosome biogenesis in eukaryotes Plant hormone signal transduction Purine metabolism Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001126 | Cell cycle nuclear origin of replication recognition complex hydrolase activity Ribosome biogenesis in eukaryotes DNA replication kinase activity metabolic process phosphorylation transferase activity nucleic acid binding | details |
| CFinderADM001297 | Amyotrophic lateral sclerosis (ALS) base-excision repair, AP site formation DNA N-glycosylase activity queuine tRNA-ribosyltransferase activity DNA-(apurinic or apyrimidinic site) lyase activity queuosine biosynthetic process protein import into nucleus, translocation ribosomal protein import into nucleus protein import into nucleus, docking mitochondrial outer membrane translocase complex nuclear membrane nuclear periphery protein import into mitochondrial matrix NLS-bearing protein import into nucleus protein channel activity Base excision repair tRNA modification nuclear localization sequence binding Ran GTPase binding 4 iron, 4 sulfur cluster binding protein transporter activity RNA transport nucleic acid binding DNA binding | details |
| CFinderADM002112 | clathrin vesicle coat mitotic spindle assembly checkpoint nuclear envelope Cell cycle vesicle-mediated transport endomembrane system Ubiquitin_Proteasome_system, E3 adaptor: DWD plasma membrane | details |
Expression profiles
 Show details about module gene expression profiling |