CFinderADM000834's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| superpathway of thiamine diphosphate biosynthesis III (eukaryotes) | 3.93E-06 | plantCyc |
| thiazole biosynthesis III (eukaryotes) | 4.91E-06 | plantCyc |
| response to red light | 2.55E-05 | GO:0010114 |
| photoperiodism, flowering | 2.55E-05 | GO:0048573 |
| thiamine biosynthetic process | 2.55E-05 | GO:0009228 |
| thiazole biosynthetic process | 2.55E-05 | GO:0052837 |
| positive regulation of circadian rhythm | 2.55E-05 | GO:0042753 |
| red or far-red light signaling pathway | 2.55E-05 | GO:0010017 |
| entrainment of circadian clock | 2.55E-05 | GO:0009649 |
| Thiamine metabolism | 8.89E-05 | KEGG pathway |
| proteasome core complex, alpha-subunit complex | 0.000103467 | GO:0019773 |
| regulation of flower development | 0.000121751 | GO:0009909 |
| Proteasome | 0.000351523 | KEGG pathway |
| threonine-type endopeptidase activity | 0.000554542 | GO:0004298 |
| response to stress | 0.001161881 | GO:0006950 |
| ubiquitin-dependent protein catabolic process | 0.001355223 | GO:0006511 |
| nucleus | 0.002587041 | GO:0005634 |
| protein homodimerization activity | 0.002921653 | GO:0042803 |
| chloroplast stroma | 0.019457813 | GO:0009570 |
| oxidoreductase activity | 0.03346769 | GO:0016491 |
| nucleic acid binding | 0.03346769 | GO:0003676 |
| nucleotide binding | 0.036737446 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005304 | AT4G37300 (6.00E-18) | MEE59|maternal effect embryo arrest 59 |
| CRO_T015528 | AT1G32580 (3.00E-80) | plastid developmental protein DAG, putative |
| CRO_T020694 | AT2G29950 (3.00E-17) | ELF4-L1|ELF4-like 1 |
| CRO_T025404 | AT3G22110 (5.00E-93) | PAC1|20S proteasome alpha subunit C1 |
| CRO_T031710 | AT5G54770 (2.00E-159) | THI4|THIAMINE4; TZ|THIAZOLE REQUIRING |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000805 | superpathway of thiamine diphosphate biosynthesis III (eukaryotes) thiazole biosynthesis III (eukaryotes) thiazole biosynthetic process Thiamine metabolism thiamine biosynthetic process metal ion binding response to stress ubiquitin-dependent protein catabolic process ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3: U-box protein ubiquitination Ubiquitin_Proteasome_system, E3: RING oxidoreductase activity transmembrane transport chloroplast stroma | details |
| CFinderADM000835 | phosphomannomutase activity Phagosome GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis proteasome core complex, alpha-subunit complex structural constituent of cytoskeleton threonine-type endopeptidase activity L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II microtubule-based process Proteasome cytoplasm ubiquitin-dependent protein catabolic process microtubule GTPase activity GTP binding carbohydrate metabolic process | details |
| CFinderADM000836 | histone H3-K36 demethylation mRNA pseudouridine synthesis formation of glycosidic bonds, GlycosylTransferases: GTnc histone H3-K36 methylation histone methyltransferase activity (H3-K36 specific) regulation of circadian rhythm mannosyltransferase activity phosphomannomutase activity Transcription_related, Transcription regulator: Jumonji Circadian rhythm GPI anchor biosynthetic process GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis pseudouridine synthase activity glycine cleavage proteasome core complex, alpha-subunit complex threonine-type endopeptidase activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II TCA cycle II (plants and fungi) iron-sulfur cluster assembly tRNA modification Proteasome aerobic respiration III (alternative oxidase pathway) aerobic respiration I (cytochrome c) ubiquitin-dependent protein catabolic process carbohydrate binding catalytic activity endoplasmic reticulum membrane carbohydrate metabolic process transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001169 | Proteasome phosphomannomutase activity GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis cytosolic proteasome complex proteasome core complex, alpha-subunit complex nuclear proteasome complex positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis proteasome-activating ATPase activity sucrose biosynthesis II TBP-class protein binding threonine-type endopeptidase activity ER-associated ubiquitin-dependent protein catabolic process cytosol Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase peptidyl-serine phosphorylation ubiquitin-dependent protein catabolic process peptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII intracellular signal transduction ATP binding kinase activity catalytic activity carbohydrate metabolic process phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nucleotide binding protein serine/threonine kinase activity | details |
| CFinderADM001584 | protein folding N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity regulation of abscisic acid-activated signaling pathway positive regulation of circadian rhythm entrainment of circadian clock maintenance of seed dormancy response to red light red or far-red light signaling pathway photoperiodism, flowering NOD-like receptor signaling pathway Other glycan degradation regulation of flower development abscisic acid binding sulfate assimilation cellular response to oxidative stress oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor plasma membrane protein disulfide oxidoreductase activity response to stress unfolded protein binding protein homodimerization activity cell redox homeostasis Protein processing in endoplasmic reticulum intracellular membrane-bounded organelle | details |
| CFinderADM001756 | NOD-like receptor signaling pathway entrainment of circadian clock red or far-red light signaling pathway photoperiodism, flowering response to red light positive regulation of circadian rhythm regulation of flower development cellular response to oxidative stress sulfate assimilation transferase activity, transferring hexosyl groups oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity protein homodimerization activity cell redox homeostasis protein folding metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: RING intracellular membrane-bounded organelle | details |
| CFinderADM001818 | Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity phosphomannomutase activity mannosyltransferase activity Other glycan degradation proteasome-activating ATPase activity positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GPI anchor biosynthetic process positive regulation of proteasomal protein catabolic process GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis TBP-class protein binding Glycosylphosphatidylinositol(GPI)-anchor biosynthesis nuclear proteasome complex proteasome core complex, alpha-subunit complex cytosolic proteasome complex threonine-type endopeptidase activity ER-associated ubiquitin-dependent protein catabolic process L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II proteasome regulatory particle, base subcomplex ubiquitin-dependent protein catabolic process peptidase activity endoplasmic reticulum membrane carbohydrate metabolic process | details |
| CFinderADM001980 | Proteasome nucleus dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity positive regulation of circadian rhythm dolichol metabolic process entrainment of circadian clock protein O-linked mannosylation photoperiodism, flowering response to red light red or far-red light signaling pathway protein N-glycosylation (eukaryotic, high mannose) cytosolic proteasome complex proteasome core complex, alpha-subunit complex nuclear proteasome complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GPI anchor biosynthetic process protein N-linked glycosylation proteasome regulatory particle, base subcomplex regulation of flower development proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding threonine-type endopeptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription factor: G2-like N-Glycan biosynthesis calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity Plant-pathogen interaction plasma membrane cytoplasm protein autophosphorylation abscisic acid-activated signaling pathway peptidyl-serine phosphorylation multicellular organism development ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: ERF protein homodimerization activity peptidase activity calmodulin binding intracellular signal transduction endoplasmic reticulum membrane calcium ion binding ATP binding | details |
Expression profiles
 Show details about module gene expression profiling |