CFinderADM001169's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Proteasome | 5.71E-09 | KEGG pathway |
| phosphomannomutase activity | 8.29E-05 | GO:0004615 |
| GDP-glucose biosynthesis | 0.000102097 | plantCyc |
| GDP-mannose biosynthesis | 0.000102097 | plantCyc |
| glucose and glucose-1-phosphate degradation | 0.000102097 | plantCyc |
| UDP-glucose biosynthesis | 0.000102097 | plantCyc |
| cytosolic proteasome complex | 0.00013271 | GO:0031597 |
| proteasome core complex, alpha-subunit complex | 0.00013271 | GO:0019773 |
| nuclear proteasome complex | 0.00013271 | GO:0031595 |
| positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 0.000171156 | GO:0045899 |
| positive regulation of proteasomal protein catabolic process | 0.000171156 | GO:1901800 |
| proteasome regulatory particle, base subcomplex | 0.000216949 | GO:0008540 |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.00022034 | plantCyc |
| starch biosynthesis | 0.00022034 | plantCyc |
| proteasome-activating ATPase activity | 0.000227679 | GO:0036402 |
| sucrose biosynthesis II | 0.000242467 | plantCyc |
| TBP-class protein binding | 0.000250988 | GO:0017025 |
| threonine-type endopeptidase activity | 0.000392567 | GO:0004298 |
| ER-associated ubiquitin-dependent protein catabolic process | 0.00039348 | GO:0030433 |
| cytosol | 0.000516425 | GO:0005829 |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.001397146 | kinase family |
| peptidyl-serine phosphorylation | 0.002207807 | GO:0018105 |
| ubiquitin-dependent protein catabolic process | 0.002641265 | GO:0006511 |
| peptidase activity | 0.003407713 | GO:0008233 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003427709 | cazy family |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.003896278 | kinase family |
| intracellular signal transduction | 0.004090277 | GO:0035556 |
| ATP binding | 0.012984828 | GO:0005524 |
| kinase activity | 0.014650036 | GO:0016301 |
| catalytic activity | 0.016330624 | GO:0003824 |
| carbohydrate metabolic process | 0.017597904 | GO:0005975 |
| phosphorylation | 0.017597904 | GO:0016310 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.019304528 | cazy family |
| nucleotide binding | 0.04519461 | GO:0000166 |
| protein serine/threonine kinase activity | 0.04519461 | GO:0004674 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000036 | AT1G17270 (0) | O-fucosyltransferase family protein |
| CRO_T007396 | AT5G44700 (3.00E-173) | EDA23|EMBRYO SAC DEVELOPMENT ARREST 23; GSO2|GASSHO 2 |
| CRO_T007963 | AT5G17530 (0) | phosphoglucosamine mutase family protein |
| CRO_T016399 | AT5G09890 (0) | Protein kinase family protein |
| CRO_T025404 | AT3G22110 (5.00E-93) | PAC1|20S proteasome alpha subunit C1 |
| CRO_T025814 | AT1G52920 (1.00E-31) | GCR2|G-PROTEIN COUPLED RECEPTOR 2; GPCR|G protein coupled receptor |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000834 | superpathway of thiamine diphosphate biosynthesis III (eukaryotes) thiazole biosynthesis III (eukaryotes) response to red light photoperiodism, flowering thiamine biosynthetic process thiazole biosynthetic process positive regulation of circadian rhythm red or far-red light signaling pathway entrainment of circadian clock Thiamine metabolism proteasome core complex, alpha-subunit complex regulation of flower development Proteasome threonine-type endopeptidase activity response to stress ubiquitin-dependent protein catabolic process nucleus protein homodimerization activity chloroplast stroma oxidoreductase activity nucleic acid binding nucleotide binding | details |
| CFinderADM000835 | phosphomannomutase activity Phagosome GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis proteasome core complex, alpha-subunit complex structural constituent of cytoskeleton threonine-type endopeptidase activity L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II microtubule-based process Proteasome cytoplasm ubiquitin-dependent protein catabolic process microtubule GTPase activity GTP binding carbohydrate metabolic process | details |
| CFinderADM000836 | histone H3-K36 demethylation mRNA pseudouridine synthesis formation of glycosidic bonds, GlycosylTransferases: GTnc histone H3-K36 methylation histone methyltransferase activity (H3-K36 specific) regulation of circadian rhythm mannosyltransferase activity phosphomannomutase activity Transcription_related, Transcription regulator: Jumonji Circadian rhythm GPI anchor biosynthetic process GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis pseudouridine synthase activity glycine cleavage proteasome core complex, alpha-subunit complex threonine-type endopeptidase activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II TCA cycle II (plants and fungi) iron-sulfur cluster assembly tRNA modification Proteasome aerobic respiration III (alternative oxidase pathway) aerobic respiration I (cytochrome c) ubiquitin-dependent protein catabolic process carbohydrate binding catalytic activity endoplasmic reticulum membrane carbohydrate metabolic process transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001025 | response to hypoxia Taurine and hypotaurine metabolism TCA cycle II (plants and fungi) Proteasome aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) cellular metabolic process single-organism cellular process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 phosphorylation kinase activity hydrolase activity nucleotide binding | details |
| CFinderADM001168 | N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity red chlorophyll catabolite reductase activity phosphomannomutase activity defense response, incompatible interaction regulation of plant-type hypersensitive response proteasome-activating ATPase activity positive regulation of RNA polymerase II transcriptional preinitiation complex assembly chlorophyll catabolic process positive regulation of proteasomal protein catabolic process chlorophyll a degradation II GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis TBP-class protein binding Other glycan degradation nuclear proteasome complex cytosolic proteasome complex L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis ER-associated ubiquitin-dependent protein catabolic process sucrose biosynthesis II proteasome regulatory particle, base subcomplex cytosol Porphyrin and chlorophyll metabolism Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: HB peptidase activity carbohydrate metabolic process chloroplast envelope chloroplast stroma regulation of transcription, DNA-templated DNA binding | details |
| CFinderADM001331 | maintenance of seed dormancy carbon utilization regulation of abscisic acid-activated signaling pathway N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity phosphomannomutase activity carbonate dehydratase activity Other glycan degradation abscisic acid binding GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis Nitrogen metabolism L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II carbohydrate metabolic process zinc ion binding | details |
| CFinderADM001818 | Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity phosphomannomutase activity mannosyltransferase activity Other glycan degradation proteasome-activating ATPase activity positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GPI anchor biosynthetic process positive regulation of proteasomal protein catabolic process GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis TBP-class protein binding Glycosylphosphatidylinositol(GPI)-anchor biosynthesis nuclear proteasome complex proteasome core complex, alpha-subunit complex cytosolic proteasome complex threonine-type endopeptidase activity ER-associated ubiquitin-dependent protein catabolic process L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II proteasome regulatory particle, base subcomplex ubiquitin-dependent protein catabolic process peptidase activity endoplasmic reticulum membrane carbohydrate metabolic process | details |
| CFinderADM001980 | Proteasome nucleus dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity positive regulation of circadian rhythm dolichol metabolic process entrainment of circadian clock protein O-linked mannosylation photoperiodism, flowering response to red light red or far-red light signaling pathway protein N-glycosylation (eukaryotic, high mannose) cytosolic proteasome complex proteasome core complex, alpha-subunit complex nuclear proteasome complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GPI anchor biosynthetic process protein N-linked glycosylation proteasome regulatory particle, base subcomplex regulation of flower development proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding threonine-type endopeptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription factor: G2-like N-Glycan biosynthesis calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity Plant-pathogen interaction plasma membrane cytoplasm protein autophosphorylation abscisic acid-activated signaling pathway peptidyl-serine phosphorylation multicellular organism development ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: ERF protein homodimerization activity peptidase activity calmodulin binding intracellular signal transduction endoplasmic reticulum membrane calcium ion binding ATP binding | details |
Expression profiles
 Show details about module gene expression profiling |