CFinderADM000841's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to extracellular stimulus | 1.92E-05 | GO:0009991 |
| xyloglucan biosynthetic process | 1.92E-05 | GO:0009969 |
| mitochondrial mRNA modification | 1.92E-05 | GO:0080156 |
| endomembrane system organization | 1.92E-05 | GO:0010256 |
| fucose biosynthetic process | 1.92E-05 | GO:0042353 |
| regulation of root development | 1.92E-05 | GO:2000280 |
| organ morphogenesis | 1.92E-05 | GO:0009887 |
| lateral root development | 2.24E-05 | GO:0048527 |
| reactive oxygen species metabolic process | 2.24E-05 | GO:0072593 |
| plastid envelope | 2.97E-05 | GO:0009526 |
| endoplasmic reticulum unfolded protein response | 3.42E-05 | GO:0030968 |
| fruit development | 3.42E-05 | GO:0010154 |
| heterotrimeric G-protein complex | 3.71E-05 | GO:0005834 |
| defense response to fungus, incompatible interaction | 4.03E-05 | GO:0009817 |
| sugar mediated signaling pathway | 5.68E-05 | GO:0010182 |
| Ras signaling pathway | 6.49E-05 | KEGG pathway |
| integral component of Golgi membrane | 7.41E-05 | GO:0030173 |
| Cul4-RING E3 ubiquitin ligase complex | 8.15E-05 | GO:0080008 |
| negative regulation of abscisic acid-activated signaling pathway | 0.000100681 | GO:0009788 |
| histone acetylation | 0.000169905 | GO:0016573 |
| histone acetyltransferase activity | 0.000176333 | GO:0004402 |
| salicylic acid mediated signaling pathway | 0.000231238 | GO:0009863 |
| xyloglucan biosynthesis | 0.000260815 | plantCyc |
| jasmonic acid mediated signaling pathway | 0.000276645 | GO:0009867 |
| unidimensional cell growth | 0.00032365 | GO:0009826 |
| response to ethylene | 0.000349503 | GO:0009723 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.00036201 | cazy family |
| Transcription_related, Transcription regulator: mTERF | 0.00036201 | TF family |
| aerobic respiration I (cytochrome c) | 0.000420115 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.000420115 | plantCyc |
| NAD/NADH phosphorylation and dephosphorylation | 0.000420115 | plantCyc |
| protein transport | 0.000850945 | GO:0015031 |
| transferase activity, transferring glycosyl groups | 0.002231484 | GO:0016757 |
| trans-Golgi network | 0.004013982 | GO:0005802 |
| endosome | 0.004013982 | GO:0005768 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.007650159 | ubs family |
| endoplasmic reticulum | 0.008363478 | GO:0005783 |
| zinc ion binding | 0.04477964 | GO:0008270 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004265 | AT2G13600 (0) | SLO2|SLOW GROWTH 2 |
| CRO_T009098 | AT2G36000 (2.00E-21) | EMB3114|EMBRYO DEFECTIVE 3114 |
| CRO_T011435 | AT2G20370 (0) | KAM1|KATAMARI 1; MUR3|MURUS 3; RSA3|SHORT ROOT IN SALT MEDIUM 3 |
| CRO_T019560 | AT2G31530 (0) | EMB2289|EMBRYO DEFECTIVE 2289; SCY2|SECY HOMOLOG 2 |
| CRO_T030445 | AT5G17370 (8.00E-33) | Transducin/WD40 repeat-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000181 | Transcription_related, Transcription regulator: mTERF heterotrimeric G-protein complex lateral root development regulation of root development reactive oxygen species metabolic process response to extracellular stimulus organ morphogenesis endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction Cul4-RING E3 ubiquitin ligase complex metabolic process Ras signaling pathway negative regulation of abscisic acid-activated signaling pathway histone acetylation jasmonic acid biosynthesis jasmonic acid mediated signaling pathway histone acetyltransferase activity response to ethylene small GTPase mediated signal transduction protein ubiquitination endoplasmic reticulum intracellular ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD formation of glycosidic bonds, GlycosylTransferases: GTnc GTP binding catalytic activity | details |
| CFinderADM000245 | xyloglucan biosynthetic process response to extracellular stimulus fucose biosynthetic process organ morphogenesis regulation of root development endomembrane system organization reactive oxygen species metabolic process lateral root development tau-protein kinase activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction heterotrimeric G-protein complex Ras signaling pathway Cul4-RING E3 ubiquitin ligase complex integral component of Golgi membrane negative regulation of abscisic acid-activated signaling pathway histone acetyltransferase activity histone acetylation salicylic acid mediated signaling pathway xyloglucan biosynthesis jasmonic acid mediated signaling pathway unidimensional cell growth response to ethylene formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Transcription_related, Transcription regulator: mTERF aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation transferase activity, transferring glycosyl groups endosome trans-Golgi network Ubiquitin_Proteasome_system, E3 adaptor: DWD endoplasmic reticulum protein phosphorylation | details |
| CFinderADM000438 | reactive oxygen species metabolic process thymidylate kinase activity 1-phosphatidylinositol-3-kinase activity response to extracellular stimulus dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process organ morphogenesis microgametogenesis regulation of root development phosphatidylinositol-3-phosphate biosynthetic process phosphatidylinositol 3-kinase complex lateral root development tau-protein kinase activity endoplasmic reticulum unfolded protein response fruit development phosphatidylinositol-mediated signaling uridylate kinase activity defense response to fungus, incompatible interaction heterotrimeric G-protein complex pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I negative regulation of abscisic acid-activated signaling pathway cullin-RING ubiquitin ligase complex Cul4-RING E3 ubiquitin ligase complex motor activity histone acetyltransferase activity myosin complex Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Ubiquitin_Proteasome_system, E3 adaptor: Cullin histone acetylation Transcription_related, Transcription regulator: mTERF phosphatidylinositol phosphorylation Endocytosis jasmonic acid mediated signaling pathway 3-phosphoinositide biosynthesis response to ethylene Ras signaling pathway ubiquitin protein ligase binding actin binding Pyrimidine metabolism Inositol phosphate metabolism response to salt stress protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Protein processing in endoplasmic reticulum ATP binding endoplasmic reticulum intracellular | details |
| CFinderADM000476 | dTTP biosynthetic process dTDP biosynthetic process response to extracellular stimulus branched-chain amino acid catabolic process dUDP biosynthetic process isovaleryl-CoA dehydrogenase activity aldehyde-lyase activity thymidylate kinase activity organ morphogenesis seed coat development regulation of root development reactive oxygen species metabolic process arabinan catabolic process lateral root development leucine catabolic process endoplasmic reticulum unfolded protein response fruit development xylan catabolic process defense response to fungus, incompatible interaction xylan 1,4-beta-xylosidase activity lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase plant-type hypersensitive response phosphogluconate dehydrogenase (decarboxylating) activity uridylate kinase activity Tyrosine metabolism Valine, leucine and isoleucine degradation alpha-L-arabinofuranosidase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway fatty-acyl-CoA binding L-leucine degradation I L-phenylalanine biosynthesis III (cytosolic, plants) plastoquinol-9 biosynthesis I pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) vitamin E biosynthesis (tocopherols) Ras signaling pathway histone acetylation histone acetyltransferase activity Cul4-RING E3 ubiquitin ligase complex pyrimidine deoxyribonucleotides de novo biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF Pyrimidine metabolism jasmonic acid mediated signaling pathway L-valine degradation I response to ethylene sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle glycolysis IV (plant cytosol) gluconeogenesis I glycolysis I (from glucose 6-phosphate) lyase activity mitochondrial matrix NAD binding electron carrier activity flavin adenine dinucleotide binding transporter activity apoplast plant-type cell wall Ubiquitin_Proteasome_system, E3 adaptor: DWD transport endoplasmic reticulum carbohydrate metabolic process | details |
| CFinderADM000571 | xyloglucan biosynthetic process fucose biosynthetic process endomembrane system organization sulfur compound metabolic process 3'(2'),5'-bisphosphate nucleotidase activity Sulfur metabolism integral component of Golgi membrane xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB-related salicylic acid mediated signaling pathway phosphatidylinositol phosphorylation aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation unidimensional cell growth photosystem I small GTPase mediated signal transduction Photosynthesis dephosphorylation transferase activity, transferring glycosyl groups magnesium ion binding methyltransferase activity endosome trans-Golgi network plastid methylation GTP binding transmembrane transport RNA binding intracellular | details |
| CFinderADM001065 | Carbon metabolism glycine hydroxymethyltransferase activity 3-hydroxyisobutyryl-CoA hydrolase activity regulation of root development lateral root development reactive oxygen species metabolic process organ morphogenesis response to extracellular stimulus glycine metabolic process L-serine metabolic process endoplasmic reticulum unfolded protein response fruit development heterotrimeric G-protein complex defense response to fungus, incompatible interaction tetrahydrofolate interconversion Cul4-RING E3 ubiquitin ligase complex SCF-dependent proteasomal ubiquitin-dependent protein catabolic process negative regulation of abscisic acid-activated signaling pathway folate polyglutamylation glycine biosynthesis Ras signaling pathway SCF ubiquitin ligase complex histone acetyltransferase activity histone acetylation folate transformations II L-valine degradation I photorespiration jasmonic acid mediated signaling pathway response to ethylene Transcription_related, Transcription regulator: mTERF ubiquitin-protein transferase activity pyridoxal phosphate binding intracellular protein transport endoplasmic reticulum intracellular Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001159 | xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan biosynthetic process fucose biosynthetic process endomembrane system organization plastid envelope 3-hydroxyacyl-CoA dehydrogenase activity integral component of Golgi membrane fatty acid metabolic process unsaturated, even numbered fatty acid β-oxidation salicylic acid mediated signaling pathway unidimensional cell growth fatty acid β-oxidation II (peroxisome) NAD/NADH phosphorylation and dephosphorylation aerobic respiration III (alternative oxidase pathway) aerobic respiration I (cytochrome c) protein transport Fatty acid metabolism RNA degradation very long chain fatty acid biosynthesis II transferase activity, transferring glycosyl groups trans-Golgi network endosome intracellular membrane-bounded organelle RNA binding | details |
| CFinderADM001614 | plastid envelope xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc detoxification of reactive carbonyls in chloroplasts protein transport peptidase activity Protein processing in endoplasmic reticulum | details |
| CFinderADM001924 | Ubiquitin_Proteasome_system, E3 adaptor: DWD heterotrimeric G-protein complex reactive oxygen species metabolic process lateral root development response to extracellular stimulus organ morphogenesis regulation of root development endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction Cul4-RING E3 ubiquitin ligase complex Ras signaling pathway negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene Transcription_related, Transcription regulator: SNF2 RNA secondary structure unwinding ATP-dependent RNA helicase activity intracellular protein transport endoplasmic reticulum intracellular RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |