CFinderADM001065's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Carbon metabolism | 7.08E-06 | KEGG pathway |
| glycine hydroxymethyltransferase activity | 3.22E-05 | GO:0004372 |
| 3-hydroxyisobutyryl-CoA hydrolase activity | 3.22E-05 | GO:0003860 |
| regulation of root development | 3.30E-05 | GO:2000280 |
| lateral root development | 3.30E-05 | GO:0048527 |
| reactive oxygen species metabolic process | 3.30E-05 | GO:0072593 |
| organ morphogenesis | 3.30E-05 | GO:0009887 |
| response to extracellular stimulus | 3.30E-05 | GO:0009991 |
| glycine metabolic process | 3.42E-05 | GO:0006544 |
| L-serine metabolic process | 3.42E-05 | GO:0006563 |
| endoplasmic reticulum unfolded protein response | 3.42E-05 | GO:0030968 |
| fruit development | 3.42E-05 | GO:0010154 |
| heterotrimeric G-protein complex | 3.45E-05 | GO:0005834 |
| defense response to fungus, incompatible interaction | 3.96E-05 | GO:0009817 |
| tetrahydrofolate interconversion | 4.50E-05 | GO:0035999 |
| Cul4-RING E3 ubiquitin ligase complex | 7.59E-05 | GO:0080008 |
| SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 8.33E-05 | GO:0031146 |
| negative regulation of abscisic acid-activated signaling pathway | 8.87E-05 | GO:0009788 |
| folate polyglutamylation | 8.96E-05 | plantCyc |
| glycine biosynthesis | 8.96E-05 | plantCyc |
| Ras signaling pathway | 9.01E-05 | KEGG pathway |
| SCF ubiquitin ligase complex | 9.19E-05 | GO:0019005 |
| histone acetyltransferase activity | 0.000117114 | GO:0004402 |
| histone acetylation | 0.000148936 | GO:0016573 |
| folate transformations II | 0.000149075 | plantCyc |
| L-valine degradation I | 0.000149075 | plantCyc |
| photorespiration | 0.000149075 | plantCyc |
| jasmonic acid mediated signaling pathway | 0.000256515 | GO:0009867 |
| response to ethylene | 0.000339559 | GO:0009723 |
| Transcription_related, Transcription regulator: mTERF | 0.000534817 | TF family |
| ubiquitin-protein transferase activity | 0.002964837 | GO:0004842 |
| pyridoxal phosphate binding | 0.002964837 | GO:0030170 |
| intracellular protein transport | 0.003860061 | GO:0006886 |
| endoplasmic reticulum | 0.007054677 | GO:0005783 |
| intracellular | 0.007931552 | GO:0005622 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.008333453 | ubs family |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.008333453 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002018 | AT4G32520 (0) | AtSHMT3|SERINE HYDROXYMETHYLTRANSFERASE 3 |
| CRO_T009098 | AT2G36000 (2.00E-21) | EMB3114|EMBRYO DEFECTIVE 3114 |
| CRO_T009950 | AT1G06210 (7.00E-41) | ENTH/VHS/GAT family protein |
| CRO_T019401 | AT4G31810 (4.00E-133) | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
| CRO_T023414 | AT5G49610 (4.00E-15) | F-box family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000181 | Transcription_related, Transcription regulator: mTERF heterotrimeric G-protein complex lateral root development regulation of root development reactive oxygen species metabolic process response to extracellular stimulus organ morphogenesis endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction Cul4-RING E3 ubiquitin ligase complex metabolic process Ras signaling pathway negative regulation of abscisic acid-activated signaling pathway histone acetylation jasmonic acid biosynthesis jasmonic acid mediated signaling pathway histone acetyltransferase activity response to ethylene small GTPase mediated signal transduction protein ubiquitination endoplasmic reticulum intracellular ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD formation of glycosidic bonds, GlycosylTransferases: GTnc GTP binding catalytic activity | details |
| CFinderADM000245 | xyloglucan biosynthetic process response to extracellular stimulus fucose biosynthetic process organ morphogenesis regulation of root development endomembrane system organization reactive oxygen species metabolic process lateral root development tau-protein kinase activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction heterotrimeric G-protein complex Ras signaling pathway Cul4-RING E3 ubiquitin ligase complex integral component of Golgi membrane negative regulation of abscisic acid-activated signaling pathway histone acetyltransferase activity histone acetylation salicylic acid mediated signaling pathway xyloglucan biosynthesis jasmonic acid mediated signaling pathway unidimensional cell growth response to ethylene formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Transcription_related, Transcription regulator: mTERF aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation transferase activity, transferring glycosyl groups endosome trans-Golgi network Ubiquitin_Proteasome_system, E3 adaptor: DWD endoplasmic reticulum protein phosphorylation | details |
| CFinderADM000438 | reactive oxygen species metabolic process thymidylate kinase activity 1-phosphatidylinositol-3-kinase activity response to extracellular stimulus dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process organ morphogenesis microgametogenesis regulation of root development phosphatidylinositol-3-phosphate biosynthetic process phosphatidylinositol 3-kinase complex lateral root development tau-protein kinase activity endoplasmic reticulum unfolded protein response fruit development phosphatidylinositol-mediated signaling uridylate kinase activity defense response to fungus, incompatible interaction heterotrimeric G-protein complex pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I negative regulation of abscisic acid-activated signaling pathway cullin-RING ubiquitin ligase complex Cul4-RING E3 ubiquitin ligase complex motor activity histone acetyltransferase activity myosin complex Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Ubiquitin_Proteasome_system, E3 adaptor: Cullin histone acetylation Transcription_related, Transcription regulator: mTERF phosphatidylinositol phosphorylation Endocytosis jasmonic acid mediated signaling pathway 3-phosphoinositide biosynthesis response to ethylene Ras signaling pathway ubiquitin protein ligase binding actin binding Pyrimidine metabolism Inositol phosphate metabolism response to salt stress protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Protein processing in endoplasmic reticulum ATP binding endoplasmic reticulum intracellular | details |
| CFinderADM000476 | dTTP biosynthetic process dTDP biosynthetic process response to extracellular stimulus branched-chain amino acid catabolic process dUDP biosynthetic process isovaleryl-CoA dehydrogenase activity aldehyde-lyase activity thymidylate kinase activity organ morphogenesis seed coat development regulation of root development reactive oxygen species metabolic process arabinan catabolic process lateral root development leucine catabolic process endoplasmic reticulum unfolded protein response fruit development xylan catabolic process defense response to fungus, incompatible interaction xylan 1,4-beta-xylosidase activity lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase plant-type hypersensitive response phosphogluconate dehydrogenase (decarboxylating) activity uridylate kinase activity Tyrosine metabolism Valine, leucine and isoleucine degradation alpha-L-arabinofuranosidase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway fatty-acyl-CoA binding L-leucine degradation I L-phenylalanine biosynthesis III (cytosolic, plants) plastoquinol-9 biosynthesis I pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) vitamin E biosynthesis (tocopherols) Ras signaling pathway histone acetylation histone acetyltransferase activity Cul4-RING E3 ubiquitin ligase complex pyrimidine deoxyribonucleotides de novo biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF Pyrimidine metabolism jasmonic acid mediated signaling pathway L-valine degradation I response to ethylene sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle glycolysis IV (plant cytosol) gluconeogenesis I glycolysis I (from glucose 6-phosphate) lyase activity mitochondrial matrix NAD binding electron carrier activity flavin adenine dinucleotide binding transporter activity apoplast plant-type cell wall Ubiquitin_Proteasome_system, E3 adaptor: DWD transport endoplasmic reticulum carbohydrate metabolic process | details |
| CFinderADM000841 | response to extracellular stimulus xyloglucan biosynthetic process mitochondrial mRNA modification endomembrane system organization fucose biosynthetic process regulation of root development organ morphogenesis lateral root development reactive oxygen species metabolic process plastid envelope endoplasmic reticulum unfolded protein response fruit development heterotrimeric G-protein complex defense response to fungus, incompatible interaction sugar mediated signaling pathway Ras signaling pathway integral component of Golgi membrane Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity salicylic acid mediated signaling pathway xyloglucan biosynthesis jasmonic acid mediated signaling pathway unidimensional cell growth response to ethylene formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: mTERF aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation protein transport transferase activity, transferring glycosyl groups trans-Golgi network endosome Ubiquitin_Proteasome_system, E3 adaptor: DWD endoplasmic reticulum zinc ion binding | details |
| CFinderADM001310 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit clathrin heavy chain binding transferase activity glycine hydroxymethyltransferase activity glycine metabolic process clathrin-mediated endocytosis L-serine metabolic process tetrahydrofolate interconversion folate polyglutamylation glycine biosynthesis pollen germination formation of glycosidic bonds, GlycosylTransferases: GTnc pollen tube growth xyloglucan biosynthesis cellulose biosynthesis folate transformations II photorespiration structural molecule activity Endocytosis catalytic step 2 spliceosome RNA secondary structure unwinding ATP-dependent RNA helicase activity intracellular protein transport pyridoxal phosphate binding Carbon metabolism nucleic acid binding | details |
| CFinderADM001765 | hydroxyjasmonate sulfate biosynthesis indole-3-acetate activation I wogonin metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycosaminoglycan degradation baicalein degradation (hydrogen peroxide detoxification) SCF ubiquitin ligase complex SCF-dependent proteasomal ubiquitin-dependent protein catabolic process hydrolase activity, acting on glycosyl bonds response to stress formation of glycosidic bonds, GlycosylTransferases: GTnc ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box carbohydrate metabolic process metabolic process hydrolase activity | details |
| CFinderADM001903 | clathrin coat of coated pit clathrin coat of trans-Golgi network vesicle cytidine to uridine editing clathrin-mediated endocytosis L-leucine degradation I protein import into peroxisome matrix leucine catabolic process fatty acid beta-oxidation clathrin heavy chain binding Valine, leucine and isoleucine degradation SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Galactose metabolism Peroxisome beta-galactosidase activity structural molecule activity cobalt ion binding intracellular protein transport ligase activity ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular carbohydrate metabolic process nucleic acid binding hydrolase activity | details |
| CFinderADM001924 | Ubiquitin_Proteasome_system, E3 adaptor: DWD heterotrimeric G-protein complex reactive oxygen species metabolic process lateral root development response to extracellular stimulus organ morphogenesis regulation of root development endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction Cul4-RING E3 ubiquitin ligase complex Ras signaling pathway negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene Transcription_related, Transcription regulator: SNF2 RNA secondary structure unwinding ATP-dependent RNA helicase activity intracellular protein transport endoplasmic reticulum intracellular RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |