CFinderADM000181's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: mTERF | 3.33E-08 | TF family |
| heterotrimeric G-protein complex | 8.70E-05 | GO:0005834 |
| lateral root development | 9.59E-05 | GO:0048527 |
| regulation of root development | 9.59E-05 | GO:2000280 |
| reactive oxygen species metabolic process | 9.59E-05 | GO:0072593 |
| response to extracellular stimulus | 9.59E-05 | GO:0009991 |
| organ morphogenesis | 9.59E-05 | GO:0009887 |
| endoplasmic reticulum unfolded protein response | 0.000127811 | GO:0030968 |
| fruit development | 0.000127811 | GO:0010154 |
| defense response to fungus, incompatible interaction | 0.000143742 | GO:0009817 |
| Cul4-RING E3 ubiquitin ligase complex | 0.000191054 | GO:0080008 |
| metabolic process | 0.000206467 | GO:0008152 |
| Ras signaling pathway | 0.000219641 | KEGG pathway |
| negative regulation of abscisic acid-activated signaling pathway | 0.000334765 | GO:0009788 |
| histone acetylation | 0.000549829 | GO:0016573 |
| jasmonic acid biosynthesis | 0.00064907 | plantCyc |
| jasmonic acid mediated signaling pathway | 0.000929041 | GO:0009867 |
| histone acetyltransferase activity | 0.001190995 | GO:0004402 |
| response to ethylene | 0.001209938 | GO:0009723 |
| small GTPase mediated signal transduction | 0.004761711 | GO:0007264 |
| protein ubiquitination | 0.011209925 | GO:0016567 |
| endoplasmic reticulum | 0.017312004 | GO:0005783 |
| intracellular | 0.022545031 | GO:0005622 |
| ubiquitin-protein transferase activity | 0.024745559 | GO:0004842 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.025190688 | ubs family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.027396304 | cazy family |
| GTP binding | 0.033046088 | GO:0005525 |
| catalytic activity | 0.033059231 | GO:0003824 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001721 | AT5G65960 (7.00E-106) | GTP binding |
| CRO_T007446 | AT3G05545 (6.00E-20) | RING/U-box superfamily protein |
| CRO_T008614 | AT5G15010 (3.00E-41) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T009098 | AT2G36000 (2.00E-21) | EMB3114|EMBRYO DEFECTIVE 3114 |
| CRO_T010921 | AT1G11780 (8.00E-111) | oxidoreductase, 2OG-Fe(II) oxygenase family protein |
| CRO_T020842 | AT5G45113 (5.00E-105) | mitochondrial transcription termination factor-related / mTERF-related |
| CRO_T028503 | AT5G63380 (1.00E-142) | AMP-dependent synthetase and ligase family protein |
| CRO_T032439 | - | - |
| CRO_T033724 | AT5G46100 (3.00E-20) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000245 | xyloglucan biosynthetic process response to extracellular stimulus fucose biosynthetic process organ morphogenesis regulation of root development endomembrane system organization reactive oxygen species metabolic process lateral root development tau-protein kinase activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction heterotrimeric G-protein complex Ras signaling pathway Cul4-RING E3 ubiquitin ligase complex integral component of Golgi membrane negative regulation of abscisic acid-activated signaling pathway histone acetyltransferase activity histone acetylation salicylic acid mediated signaling pathway xyloglucan biosynthesis jasmonic acid mediated signaling pathway unidimensional cell growth response to ethylene formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Transcription_related, Transcription regulator: mTERF aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation transferase activity, transferring glycosyl groups endosome trans-Golgi network Ubiquitin_Proteasome_system, E3 adaptor: DWD endoplasmic reticulum protein phosphorylation | details |
| CFinderADM000438 | reactive oxygen species metabolic process thymidylate kinase activity 1-phosphatidylinositol-3-kinase activity response to extracellular stimulus dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process organ morphogenesis microgametogenesis regulation of root development phosphatidylinositol-3-phosphate biosynthetic process phosphatidylinositol 3-kinase complex lateral root development tau-protein kinase activity endoplasmic reticulum unfolded protein response fruit development phosphatidylinositol-mediated signaling uridylate kinase activity defense response to fungus, incompatible interaction heterotrimeric G-protein complex pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I negative regulation of abscisic acid-activated signaling pathway cullin-RING ubiquitin ligase complex Cul4-RING E3 ubiquitin ligase complex motor activity histone acetyltransferase activity myosin complex Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Ubiquitin_Proteasome_system, E3 adaptor: Cullin histone acetylation Transcription_related, Transcription regulator: mTERF phosphatidylinositol phosphorylation Endocytosis jasmonic acid mediated signaling pathway 3-phosphoinositide biosynthesis response to ethylene Ras signaling pathway ubiquitin protein ligase binding actin binding Pyrimidine metabolism Inositol phosphate metabolism response to salt stress protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Protein processing in endoplasmic reticulum ATP binding endoplasmic reticulum intracellular | details |
| CFinderADM000454 | trans-zeatin O-beta-D-glucosyltransferase activity cis-zeatin O-beta-D-glucosyltransferase activity flavonoid metabolic process small GTPase mediated signal transduction protein ubiquitination ubiquitin-protein transferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc GTP binding intracellular hydrolase activity | details |
| CFinderADM000470 | chaperone-mediated protein complex assembly regulation of mitochondrial DNA replication oxidation-dependent protein catabolic process protein demethylation misfolded or incompletely synthesized protein catabolic process production of siRNA involved in RNA interference RISC complex Cell cycle cellular response to oxidative stress RNA phosphodiester bond hydrolysis, endonucleolytic carboxylic ester hydrolase activity ribonuclease III activity ATP-dependent peptidase activity mitochondrial matrix protein ubiquitination vacuole serine-type endopeptidase activity ubiquitin-protein transferase activity sequence-specific DNA binding RNA binding | details |
| CFinderADM000476 | dTTP biosynthetic process dTDP biosynthetic process response to extracellular stimulus branched-chain amino acid catabolic process dUDP biosynthetic process isovaleryl-CoA dehydrogenase activity aldehyde-lyase activity thymidylate kinase activity organ morphogenesis seed coat development regulation of root development reactive oxygen species metabolic process arabinan catabolic process lateral root development leucine catabolic process endoplasmic reticulum unfolded protein response fruit development xylan catabolic process defense response to fungus, incompatible interaction xylan 1,4-beta-xylosidase activity lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase plant-type hypersensitive response phosphogluconate dehydrogenase (decarboxylating) activity uridylate kinase activity Tyrosine metabolism Valine, leucine and isoleucine degradation alpha-L-arabinofuranosidase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway fatty-acyl-CoA binding L-leucine degradation I L-phenylalanine biosynthesis III (cytosolic, plants) plastoquinol-9 biosynthesis I pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) vitamin E biosynthesis (tocopherols) Ras signaling pathway histone acetylation histone acetyltransferase activity Cul4-RING E3 ubiquitin ligase complex pyrimidine deoxyribonucleotides de novo biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF Pyrimidine metabolism jasmonic acid mediated signaling pathway L-valine degradation I response to ethylene sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle glycolysis IV (plant cytosol) gluconeogenesis I glycolysis I (from glucose 6-phosphate) lyase activity mitochondrial matrix NAD binding electron carrier activity flavin adenine dinucleotide binding transporter activity apoplast plant-type cell wall Ubiquitin_Proteasome_system, E3 adaptor: DWD transport endoplasmic reticulum carbohydrate metabolic process | details |
| CFinderADM000571 | xyloglucan biosynthetic process fucose biosynthetic process endomembrane system organization sulfur compound metabolic process 3'(2'),5'-bisphosphate nucleotidase activity Sulfur metabolism integral component of Golgi membrane xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB-related salicylic acid mediated signaling pathway phosphatidylinositol phosphorylation aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation unidimensional cell growth photosystem I small GTPase mediated signal transduction Photosynthesis dephosphorylation transferase activity, transferring glycosyl groups magnesium ion binding methyltransferase activity endosome trans-Golgi network plastid methylation GTP binding transmembrane transport RNA binding intracellular | details |
| CFinderADM000572 | alpha-1,2-mannosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity glutaminyl-tRNAGln biosynthesis via transamidation mannosylation glutamyl-tRNA(Gln) amidotransferase complex mitochondrial translation protein N-glycosylation (eukaryotic, high mannose) ER-associated ubiquitin-dependent protein catabolic process mitochondrion N-Glycan biosynthesis Protein export photosystem I Aminoacyl-tRNA biosynthesis small GTPase mediated signal transduction Photosynthesis GTP binding endoplasmic reticulum intracellular chloroplast stroma | details |
| CFinderADM000832 | cellular protein metabolic process translational elongation Ubiquitin_Proteasome_system, DUB: USP cysteine-type peptidase activity translation elongation factor activity nucleotidyltransferase activity helicase activity GTPase activity intracellular proteolysis formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding | details |
| CFinderADM000841 | response to extracellular stimulus xyloglucan biosynthetic process mitochondrial mRNA modification endomembrane system organization fucose biosynthetic process regulation of root development organ morphogenesis lateral root development reactive oxygen species metabolic process plastid envelope endoplasmic reticulum unfolded protein response fruit development heterotrimeric G-protein complex defense response to fungus, incompatible interaction sugar mediated signaling pathway Ras signaling pathway integral component of Golgi membrane Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity salicylic acid mediated signaling pathway xyloglucan biosynthesis jasmonic acid mediated signaling pathway unidimensional cell growth response to ethylene formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: mTERF aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation protein transport transferase activity, transferring glycosyl groups trans-Golgi network endosome Ubiquitin_Proteasome_system, E3 adaptor: DWD endoplasmic reticulum zinc ion binding | details |
| CFinderADM001065 | Carbon metabolism glycine hydroxymethyltransferase activity 3-hydroxyisobutyryl-CoA hydrolase activity regulation of root development lateral root development reactive oxygen species metabolic process organ morphogenesis response to extracellular stimulus glycine metabolic process L-serine metabolic process endoplasmic reticulum unfolded protein response fruit development heterotrimeric G-protein complex defense response to fungus, incompatible interaction tetrahydrofolate interconversion Cul4-RING E3 ubiquitin ligase complex SCF-dependent proteasomal ubiquitin-dependent protein catabolic process negative regulation of abscisic acid-activated signaling pathway folate polyglutamylation glycine biosynthesis Ras signaling pathway SCF ubiquitin ligase complex histone acetyltransferase activity histone acetylation folate transformations II L-valine degradation I photorespiration jasmonic acid mediated signaling pathway response to ethylene Transcription_related, Transcription regulator: mTERF ubiquitin-protein transferase activity pyridoxal phosphate binding intracellular protein transport endoplasmic reticulum intracellular Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001094 | protein demethylation base-excision repair Base excision repair carboxylic ester hydrolase activity Cell cycle vacuole protein ubiquitination ubiquitin-protein transferase activity catalytic activity | details |
| CFinderADM001099 | Transcription_related, Transcription factor: RAV ribosomal large subunit binding nucleic acid binding nuclear exosome (RNase complex) Transcription_related, Transcription regulator: mTERF ribosome binding iron-sulfur cluster binding 3'-5' exonuclease activity RNA degradation iron-sulfur cluster assembly chloroplast organization nucleic acid phosphodiester bond hydrolysis RNA processing ATPase activity protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: F-box ubiquitin-protein transferase activity GTP binding plasmodesma transcription factor activity, sequence-specific DNA binding iron ion binding transcription, DNA-templated chloroplast stroma | details |
| CFinderADM001547 | RNA lariat debranching enzyme activity Transcription_related, Transcription regulator: mTERF protein processing RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome small GTPase mediated signal transduction embryo development ending in seed dormancy protein ubiquitination serine-type endopeptidase activity ubiquitin-protein transferase activity GTP binding hydrolase activity | details |
| CFinderADM001880 | ribosome biogenesis cell division embryo development ending in seed dormancy microtubule protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: F-box ubiquitin-protein transferase activity GTPase activity GTP binding | details |
| CFinderADM001924 | Ubiquitin_Proteasome_system, E3 adaptor: DWD heterotrimeric G-protein complex reactive oxygen species metabolic process lateral root development response to extracellular stimulus organ morphogenesis regulation of root development endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction Cul4-RING E3 ubiquitin ligase complex Ras signaling pathway negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene Transcription_related, Transcription regulator: SNF2 RNA secondary structure unwinding ATP-dependent RNA helicase activity intracellular protein transport endoplasmic reticulum intracellular RNA binding | details |
| CFinderADM002028 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K MAP kinase kinase activity receptor signaling protein serine/threonine kinase activity cell division MAPK cascade microtubule MAPK signaling pathway - plant embryo development ending in seed dormancy protein binding methyltransferase activity ubiquitin-protein transferase activity protein ubiquitination methylation | details |
| CFinderADM002040 | RNA lariat debranching enzyme activity exocyst mRNA splicing, via spliceosome translational initiation exocytosis RNA phosphodiester bond hydrolysis, endonucleolytic embryo development ending in seed dormancy translation initiation factor activity ubiquitin-protein transferase activity protein ubiquitination hydrolase activity | details |
| CFinderADM002280 | mevalonate pathway I coenzyme A metabolic process hydroxymethylglutaryl-CoA reductase (NADPH) activity Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase isoprenoid biosynthetic process calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity Terpenoid backbone biosynthesis Plant-pathogen interaction exocyst abscisic acid-activated signaling pathway protein autophosphorylation peptidyl-serine phosphorylation exocytosis NADP binding calmodulin binding intracellular signal transduction protein ubiquitination ubiquitin-protein transferase activity calcium ion binding endoplasmic reticulum membrane | details |
Expression profiles
 Show details about module gene expression profiling |