CFinderADM000858's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| H3 histone acetyltransferase activity | 5.13E-06 | GO:0010484 |
| root morphogenesis | 6.90E-06 | GO:0010015 |
| histone H3 acetylation | 6.90E-06 | GO:0043966 |
| Notch signaling pathway | 2.36E-05 | KEGG pathway |
| histone acetyltransferase complex | 2.56E-05 | GO:0000123 |
| maturation of SSU-rRNA | 5.98E-05 | GO:0030490 |
| Transcription_related, Transcription regulator: GNAT | 8.24E-05 | TF family |
| adenosine ribonucleotides de novo biosynthesis | 0.000131618 | plantCyc |
| response to light stimulus | 0.000160976 | GO:0009416 |
| flower development | 0.000160976 | GO:0009908 |
| Ribosome biogenesis in eukaryotes | 0.00118126 | KEGG pathway |
| transferase activity, transferring acyl groups | 0.001212793 | GO:0016746 |
| small-subunit processome | 0.001448954 | GO:0032040 |
| nucleolus | 0.003926485 | GO:0005730 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001082 | AT4G02400 (5.00E-86) | U3 ribonucleoprotein (Utp) family protein |
| CRO_T002777 | - | - |
| CRO_T017005 | AT4G02620 (1.00E-40) | vacuolar ATPase subunit F family protein |
| CRO_T031629 | - | - |
| CRO_T031745 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000514 | nucleolus maturation of SSU-rRNA small-subunit processome Ribosome biogenesis in eukaryotes nucleic acid binding Spliceosome nucleotide binding | details |
| CFinderADM001173 | histone acetyltransferase binding H3 histone acetyltransferase activity histone H3 acetylation root morphogenesis RNA polymerase II transcriptional preinitiation complex assembly transcription factor binding DNA topoisomerase activity histone acetyltransferase complex transcription factor TFIID complex chloroplast RNA processing Notch signaling pathway Transcription_related, Transcription regulator: GNAT adenosine ribonucleotides de novo biosynthesis transcription coactivator activity transcription regulatory region DNA binding response to light stimulus flower development Basal transcription factors Peroxisome regulation of transcription from RNA polymerase II promoter chloroplast unfolded protein binding zinc ion binding embryo development ending in seed dormancy protein folding ATP binding | details |
| CFinderADM001709 | positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process vacuolar acidification vacuolar proton-transporting V-type ATPase, V0 domain cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex cytoplasmic, membrane-bounded vesicle ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding proteasome-activating ATPase activity ATP hydrolysis coupled proton transport proton-transporting ATPase activity, rotational mechanism Proteasome Spliceosome Oxidative phosphorylation nucleic acid binding nucleotide binding | details |
| CFinderADM001869 | adenosine ribonucleotides de novo biosynthesis vacuolar proton-transporting V-type ATPase complex H3 histone acetyltransferase activity histone acetyltransferase complex histone H3 acetylation root morphogenesis Notch signaling pathway hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances Transcription_related, Transcription regulator: GNAT flower development response to light stimulus proton transport mRNA surveillance pathway RNA transport Oxidative phosphorylation transmembrane transport RNA binding nucleotide binding DNA binding cytoplasm | details |
| CFinderADM001946 | adenosine ribonucleotides de novo biosynthesis histone H3 acetylation root morphogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc H3 histone acetyltransferase activity Notch signaling pathway histone acetyltransferase complex Transcription_related, Transcription regulator: GNAT flower development response to light stimulus proton-transporting ATP synthase complex, catalytic core F(1) ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism mitochondrial inner membrane Oxidative phosphorylation RNA binding | details |
| CFinderADM002059 | adenosine ribonucleotides de novo biosynthesis ATPase activity, coupled to transmembrane movement of substances chorismate synthase activity H3 histone acetyltransferase activity regulation of phosphoprotein phosphatase activity histone H3 acetylation protein phosphatase type 1 complex chorismate biosynthesis from 3-dehydroquinate root morphogenesis chorismate biosynthetic process histone acetyltransferase complex transmembrane transport plant-type vacuole protein phosphatase inhibitor activity Transcription_related, Transcription regulator: GNAT Notch signaling pathway aromatic amino acid family biosynthetic process flower development response to light stimulus cellular amino acid biosynthetic process FMN binding GTPase activator activity ABC transporters pollen development positive regulation of GTPase activity peptidase activity signal transduction embryo development ending in seed dormancy Biosynthesis of amino acids Endocytosis vacuolar membrane nucleolus Golgi apparatus Oxidative phosphorylation proteolysis chloroplast stroma | details |
| CFinderADM002146 | epoxysqualene biosynthesis squalene synthase activity farnesyl-diphosphate farnesyltransferase activity lipid biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Other types of O-glycan biosynthesis Steroid biosynthesis Golgi membrane transferase activity, transferring glycosyl groups cell wall organization | details |
Expression profiles
 Show details about module gene expression profiling |