CFinderADM002146's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| epoxysqualene biosynthesis | 6.60E-06 | plantCyc |
| squalene synthase activity | 8.66E-06 | GO:0051996 |
| farnesyl-diphosphate farnesyltransferase activity | 8.66E-06 | GO:0004310 |
| lipid biosynthetic process | 1.37E-05 | GO:0008610 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 1.84E-05 | cazy family |
| Other types of O-glycan biosynthesis | 2.94E-05 | KEGG pathway |
| Steroid biosynthesis | 0.000216914 | KEGG pathway |
| Golgi membrane | 0.001348929 | GO:0000139 |
| transferase activity, transferring glycosyl groups | 0.001487656 | GO:0016757 |
| cell wall organization | 0.002257342 | GO:0071555 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002551 | AT2G35155 (0) | Trypsin family protein |
| CRO_T003439 | - | - |
| CRO_T025706 | AT4G34640 (4.00E-116) | SQS1|squalene synthase 1 |
| CRO_T030769 | AT1G70630 (7.00E-13) | RAY1|REDUCED ARABINOSE YARIV 1 |
| CRO_T031745 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000514 | nucleolus maturation of SSU-rRNA small-subunit processome Ribosome biogenesis in eukaryotes nucleic acid binding Spliceosome nucleotide binding | details |
| CFinderADM000858 | H3 histone acetyltransferase activity root morphogenesis histone H3 acetylation Notch signaling pathway histone acetyltransferase complex maturation of SSU-rRNA Transcription_related, Transcription regulator: GNAT adenosine ribonucleotides de novo biosynthesis response to light stimulus flower development Ribosome biogenesis in eukaryotes transferase activity, transferring acyl groups small-subunit processome nucleolus | details |
| CFinderADM001709 | positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process vacuolar acidification vacuolar proton-transporting V-type ATPase, V0 domain cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex cytoplasmic, membrane-bounded vesicle ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding proteasome-activating ATPase activity ATP hydrolysis coupled proton transport proton-transporting ATPase activity, rotational mechanism Proteasome Spliceosome Oxidative phosphorylation nucleic acid binding nucleotide binding | details |
| CFinderADM002162 | glycylpeptide N-tetradecanoyltransferase activity N-terminal peptidyl-glycine N-myristoylation organelle inner membrane exon-exon junction complex nuclear localization sequence binding serine-type peptidase activity RNA splicing NLS-bearing protein import into nucleus root development nuclear pore nucleoplasm protein transporter activity Spliceosome proteolysis endoplasmic reticulum | details |
| CFinderADM002250 | glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) Carbon metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc ferredoxin-NADP+ reductase activity Other types of O-glycan biosynthesis fructose-bisphosphate aldolase activity potassium ion binding pyruvate kinase activity intracellular organelle photosynthesis light reactions sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle Rubisco shunt gluconeogenesis I Golgi membrane Photosynthesis cell wall organization transferase activity, transferring glycosyl groups magnesium ion binding kinase activity cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |