CFinderADM000514's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleolus | 2.72E-11 | GO:0005730 |
| maturation of SSU-rRNA | 3.70E-11 | GO:0030490 |
| small-subunit processome | 3.44E-08 | GO:0032040 |
| Ribosome biogenesis in eukaryotes | 1.73E-07 | KEGG pathway |
| nucleic acid binding | 7.00E-05 | GO:0003676 |
| Spliceosome | 0.004398219 | KEGG pathway |
| nucleotide binding | 0.041874318 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001081 | AT4G02400 (1.00E-72) | U3 ribonucleoprotein (Utp) family protein |
| CRO_T001082 | AT4G02400 (5.00E-86) | U3 ribonucleoprotein (Utp) family protein |
| CRO_T001956 | AT1G09140 (6.00E-53) | At-SR30|Serine/Arginine-Rich Protein Splicing Factor 30; ATSRP30|SERINE-ARGININE PROTEIN 30 |
| CRO_T009214 | AT3G20550 (1.00E-69) | DDL|DAWDLE |
| CRO_T031745 | - | - |
| CRO_T031904 | AT3G62330 (8.00E-129) | Zinc knuckle (CCHC-type) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000788 | ribosomal large subunit biogenesis Spliceosome nucleolus nucleic acid binding nucleotide binding | details |
| CFinderADM000858 | H3 histone acetyltransferase activity root morphogenesis histone H3 acetylation Notch signaling pathway histone acetyltransferase complex maturation of SSU-rRNA Transcription_related, Transcription regulator: GNAT adenosine ribonucleotides de novo biosynthesis response to light stimulus flower development Ribosome biogenesis in eukaryotes transferase activity, transferring acyl groups small-subunit processome nucleolus | details |
| CFinderADM001709 | positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process vacuolar acidification vacuolar proton-transporting V-type ATPase, V0 domain cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex cytoplasmic, membrane-bounded vesicle ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding proteasome-activating ATPase activity ATP hydrolysis coupled proton transport proton-transporting ATPase activity, rotational mechanism Proteasome Spliceosome Oxidative phosphorylation nucleic acid binding nucleotide binding | details |
| CFinderADM001974 | chromosome organization plant-type vacuole adenosine ribonucleotides de novo biosynthesis DNA metabolic process helicase activity ATPase activity, coupled to transmembrane movement of substances nucleolus vacuolar membrane Golgi apparatus Spliceosome Oxidative phosphorylation transmembrane transport nucleic acid binding nucleotide binding | details |
| CFinderADM002146 | epoxysqualene biosynthesis squalene synthase activity farnesyl-diphosphate farnesyltransferase activity lipid biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Other types of O-glycan biosynthesis Steroid biosynthesis Golgi membrane transferase activity, transferring glycosyl groups cell wall organization | details |
Expression profiles
 Show details about module gene expression profiling |