CFinderADM001246's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| fatty acid biosynthesis (plant mitochondria) | 1.02E-05 | plantCyc |
| [acyl-carrier-protein] S-malonyltransferase activity | 1.57E-05 | GO:0004314 |
| P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.62E-05 | GO:0015450 |
| chloroplast stroma | 5.30E-05 | GO:0009570 |
| fatty acid biosynthesis initiation I | 5.58E-05 | plantCyc |
| cell morphogenesis | 7.72E-05 | GO:0000902 |
| protein transmembrane transport | 7.72E-05 | GO:0071806 |
| 5S rRNA binding | 7.86E-05 | GO:0008097 |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 0.000129956 | plantCyc |
| chloroplast outer membrane | 0.00015325 | GO:0009707 |
| peptidyl-prolyl cis-trans isomerase activity | 0.001175006 | GO:0003755 |
| Fatty acid metabolism | 0.001737489 | KEGG pathway |
| Ribosome | 0.006623722 | KEGG pathway |
| cellular process | 0.006673072 | GO:0009987 |
| intracellular protein transport | 0.007118815 | GO:0006886 |
| GTP binding | 0.009542919 | GO:0005525 |
| chloroplast envelope | 0.009602759 | GO:0009941 |
| metabolic process | 0.024336896 | GO:0008152 |
| translation | 0.024336896 | GO:0006412 |
| hydrolase activity | 0.027970426 | GO:0016787 |
| structural constituent of ribosome | 0.027970426 | GO:0003735 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002873 | AT2G30200 (1.00E-129) | EMB3147|EMBRYO DEFECTIVE 3147 |
| CRO_T005021 | AT1G64180 (2.00E-82) | intracellular protein transport protein USO1-related |
| CRO_T013423 | AT3G55920 (7.00E-24) | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
| CRO_T015964 | AT1G52080 (5.00E-73) | AR791|actin binding protein family |
| CRO_T030295 | AT1G48350 (3.00E-52) | EMB3105|EMBRYO DEFECTIVE 3105 |
| CRO_T033111 | AT4G02510 (1.00E-21) | PPI2|PLASTID PROTEIN IMPORT 2; TOC159|translocon at the outer envelope membrane of chloroplasts 159; TOC160|TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TOC86|TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001171 | xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc membrane Ubiquitin_Proteasome_system, E3: RING zinc ion binding | details |
| CFinderADM001247 | methylthiotransferase activity tRNA methylthiolation regulation of protein kinase activity cell morphogenesis protein kinase regulator activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity geraniol and geranial biosynthesis lignin biosynthetic process peptidyl-prolyl cis-trans isomerase activity 4 iron, 4 sulfur cluster binding Phenylpropanoid biosynthesis cellular process transmembrane transport translation structural constituent of ribosome | details |
| CFinderADM001681 | aspartate-tRNA ligase activity protein maturation by iron-sulfur cluster transfer tRNA aminoacylation for protein translation chloroplast avoidance movement protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway chloroplast accumulation movement cell morphogenesis tRNA dihydrouridine synthase activity ESCRT II complex ferrous iron binding tRNA processing iron-sulfur cluster assembly structural molecule activity 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding Transcription_related, Transcription factor: MYB cytosol mitochondrial matrix Aminoacyl-tRNA biosynthesis protein homodimerization activity Endocytosis chloroplast envelope nucleic acid binding | details |
| CFinderADM001996 | mitochondrion organization serine-type peptidase activity Protein export cellular protein metabolic process protein processing phosphoprotein phosphatase activity proteasome-mediated ubiquitin-dependent protein catabolic process dephosphorylation Transcription_related, Transcription factor: bHLH ubiquitin protein ligase activity membrane protein ubiquitination intracellular membrane-bounded organelle Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM002044 | Apoptosis - fly Carbon metabolism aminomethyltransferase activity triose-phosphate isomerase activity glyceraldehyde-3-phosphate biosynthetic process glycine catabolic process glycerol catabolic process peroxiredoxin activity gluconeogenesis transaminase activity glycine cleavage transcription factor complex chloroplast Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) glycolytic process hydrogen peroxide catabolic process rRNA binding protein binding peroxidase activity cellular oxidant detoxification Ribosome methylation transcription factor activity, sequence-specific DNA binding transcription, DNA-templated translation structural constituent of ribosome | details |
| CFinderADM002076 | cell morphogenesis | details |
Expression profiles
 Show details about module gene expression profiling |