CFinderADM001996's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitochondrion organization | 0.000120043 | GO:0007005 |
| serine-type peptidase activity | 0.000299916 | GO:0008236 |
| Protein export | 0.000402909 | KEGG pathway |
| cellular protein metabolic process | 0.000577813 | GO:0044267 |
| protein processing | 0.000577813 | GO:0016485 |
| phosphoprotein phosphatase activity | 0.001285768 | GO:0004721 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.001754342 | GO:0043161 |
| dephosphorylation | 0.002944654 | GO:0016311 |
| Transcription_related, Transcription factor: bHLH | 0.003140098 | TF family |
| ubiquitin protein ligase activity | 0.003510352 | GO:0061630 |
| membrane | 0.005756237 | GO:0016020 |
| protein ubiquitination | 0.005849162 | GO:0016567 |
| intracellular membrane-bounded organelle | 0.013322799 | GO:0043231 |
| Ubiquitin_Proteasome_system, E3: RING | 0.023586607 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003616 | AT1G29770 (3.00E-22) | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| CRO_T011812 | AT1G15590 (4.00E-15) | |
| CRO_T012864 | AT1G29960 (2.00E-10) | Peptidase S24/S26A/S26B/S26C family protein |
| CRO_T015964 | AT1G52080 (5.00E-73) | AR791|actin binding protein family |
| CRO_T024822 | AT2G46970 (2.00E-12) | PIL1|phytochrome interacting factor 3-like 1 |
| CRO_T025008 | AT5G11970 (5.00E-18) | Protein of unknown function (DUF3511) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001171 | xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc membrane Ubiquitin_Proteasome_system, E3: RING zinc ion binding | details |
| CFinderADM001246 | fatty acid biosynthesis (plant mitochondria) [acyl-carrier-protein] S-malonyltransferase activity P-P-bond-hydrolysis-driven protein transmembrane transporter activity chloroplast stroma fatty acid biosynthesis initiation I cell morphogenesis protein transmembrane transport 5S rRNA binding octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) chloroplast outer membrane peptidyl-prolyl cis-trans isomerase activity Fatty acid metabolism Ribosome cellular process intracellular protein transport GTP binding chloroplast envelope metabolic process translation hydrolase activity structural constituent of ribosome | details |
| CFinderADM002044 | Apoptosis - fly Carbon metabolism aminomethyltransferase activity triose-phosphate isomerase activity glyceraldehyde-3-phosphate biosynthetic process glycine catabolic process glycerol catabolic process peroxiredoxin activity gluconeogenesis transaminase activity glycine cleavage transcription factor complex chloroplast Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) glycolytic process hydrogen peroxide catabolic process rRNA binding protein binding peroxidase activity cellular oxidant detoxification Ribosome methylation transcription factor activity, sequence-specific DNA binding transcription, DNA-templated translation structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |