CFinderADM002044's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Apoptosis - fly | 1.45E-05 | KEGG pathway |
| Carbon metabolism | 1.45E-05 | KEGG pathway |
| aminomethyltransferase activity | 2.49E-05 | GO:0004047 |
| triose-phosphate isomerase activity | 2.49E-05 | GO:0004807 |
| glyceraldehyde-3-phosphate biosynthetic process | 3.13E-05 | GO:0046166 |
| glycine catabolic process | 3.13E-05 | GO:0006546 |
| glycerol catabolic process | 3.48E-05 | GO:0019563 |
| peroxiredoxin activity | 5.80E-05 | GO:0051920 |
| gluconeogenesis | 0.000143374 | GO:0006094 |
| transaminase activity | 0.000392567 | GO:0008483 |
| glycine cleavage | 0.000404016 | plantCyc |
| transcription factor complex | 0.000711502 | GO:0005667 |
| chloroplast | 0.000833869 | GO:0009507 |
| Calvin-Benson-Bassham cycle | 0.000956391 | plantCyc |
| gluconeogenesis I | 0.000956391 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.000956391 | plantCyc |
| glycolysis IV (plant cytosol) | 0.000956391 | plantCyc |
| glycolytic process | 0.00145829 | GO:0006096 |
| hydrogen peroxide catabolic process | 0.002285877 | GO:0042744 |
| rRNA binding | 0.003687019 | GO:0019843 |
| protein binding | 0.003687019 | GO:0005515 |
| peroxidase activity | 0.003687019 | GO:0004601 |
| cellular oxidant detoxification | 0.005355969 | GO:0098869 |
| Ribosome | 0.01323054 | KEGG pathway |
| methylation | 0.013382998 | GO:0032259 |
| transcription factor activity, sequence-specific DNA binding | 0.02228476 | GO:0003700 |
| transcription, DNA-templated | 0.033843327 | GO:0006351 |
| translation | 0.033843327 | GO:0006412 |
| structural constituent of ribosome | 0.034009115 | GO:0003735 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002359 | AT1G11860 (0) | Glycine cleavage T-protein family |
| CRO_T003200 | AT3G11630 (2.00E-101) | Thioredoxin superfamily protein |
| CRO_T005318 | AT2G43030 (3.00E-37) | Ribosomal protein L3 family protein |
| CRO_T015964 | AT1G52080 (5.00E-73) | AR791|actin binding protein family |
| CRO_T020060 | AT2G21170 (7.00E-116) | PDTPI|PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE; TIM|triosephosphate isomerase |
| CRO_T023739 | AT1G04490 (5.00E-45) | Protein of unknown function (DUF3527) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001119 | formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of mRNA stability glycogen catabolic process translational termination glycogen phosphorylase activity spliceosomal complex assembly Prp19 complex post-mRNA release spliceosomal complex prespliceosome catalytic step 1 spliceosome translation release factor activity, codon specific heat shock protein binding chloroplast precatalytic spliceosome ribosome binding catalytic step 2 spliceosome response to water deprivation unfolded protein binding pyridoxal phosphate binding Spliceosome Starch and sucrose metabolism cytosol | details |
| CFinderADM001171 | xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc membrane Ubiquitin_Proteasome_system, E3: RING zinc ion binding | details |
| CFinderADM001246 | fatty acid biosynthesis (plant mitochondria) [acyl-carrier-protein] S-malonyltransferase activity P-P-bond-hydrolysis-driven protein transmembrane transporter activity chloroplast stroma fatty acid biosynthesis initiation I cell morphogenesis protein transmembrane transport 5S rRNA binding octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) chloroplast outer membrane peptidyl-prolyl cis-trans isomerase activity Fatty acid metabolism Ribosome cellular process intracellular protein transport GTP binding chloroplast envelope metabolic process translation hydrolase activity structural constituent of ribosome | details |
| CFinderADM001996 | mitochondrion organization serine-type peptidase activity Protein export cellular protein metabolic process protein processing phosphoprotein phosphatase activity proteasome-mediated ubiquitin-dependent protein catabolic process dephosphorylation Transcription_related, Transcription factor: bHLH ubiquitin protein ligase activity membrane protein ubiquitination intracellular membrane-bounded organelle Ubiquitin_Proteasome_system, E3: RING | details |
Expression profiles
 Show details about module gene expression profiling |