CFinderADM001415's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 26,27-dehydrozymosterol metabolism | 1.83E-05 | plantCyc |
| plasmodesma | 2.12E-05 | GO:0009506 |
| SUMO activating enzyme complex | 2.83E-05 | GO:0031510 |
| SUMO activating enzyme activity | 6.44E-05 | GO:0019948 |
| small nucleolar ribonucleoprotein complex | 6.78E-05 | GO:0005732 |
| maturation of SSU-rRNA | 7.60E-05 | GO:0030490 |
| steroid biosynthetic process | 7.60E-05 | GO:0006694 |
| protein sumoylation | 7.60E-05 | GO:0016925 |
| Mpp10 complex | 7.77E-05 | GO:0034457 |
| Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase | 0.000145727 | kinase family |
| Ubiquitin_Proteasome_system, E1: ThiF | 0.000145727 | ubs family |
| plant sterol biosynthesis | 0.000161673 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000464258 | cazy family |
| viral nucleocapsid | 0.000669527 | GO:0019013 |
| nucleotidyltransferase activity | 0.000681338 | GO:0016779 |
| protein autophosphorylation | 0.000889616 | GO:0046777 |
| Steroid biosynthesis | 0.001131918 | KEGG pathway |
| S-adenosylmethionine-dependent methyltransferase activity | 0.001532003 | GO:0008757 |
| small-subunit processome | 0.001598367 | GO:0032040 |
| Ribosome biogenesis in eukaryotes | 0.001840598 | KEGG pathway |
| RNA degradation | 0.001840598 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.001840598 | KEGG pathway |
| embryo development ending in seed dormancy | 0.002062664 | GO:0009793 |
| methylation | 0.007309171 | GO:0032259 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.009629818 | cazy family |
| protein serine/threonine kinase activity | 0.029739667 | GO:0004674 |
| integral component of membrane | 0.035989761 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007324 | AT5G66540 (2.00E-30) | unknown protein |
| CRO_T011668 | AT2G21470 (0) | ATSAE2|SUMO-ACTIVATING ENZYME 2; EMB2764|EMBRYO DEFECTIVE 2764 |
| CRO_T014139 | AT4G00060 (2.00E-18) | MEE44|maternal effect embryo arrest 44 |
| CRO_T020335 | AT5G13710 (1.00E-13) | CPH|CEPHALOPOD; SMT1|sterol methyltransferase 1 |
| CRO_T023331 | AT1G30570 (0) | HERK2|hercules receptor kinase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000395 | Cytochrome_P450, Cytochrome P450: CYP716A RNA degradation plant-type cell wall organization nucleotidyltransferase activity ubiquitin-dependent protein catabolic process protein ubiquitination oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity | details |
| CFinderADM001026 | phosphoethanolamine N-methyltransferase activity phosphatidylcholine biosynthetic process phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV phosphatidylcholine biosynthesis II DNA-3-methyladenine glycosylase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc choline biosynthesis I mannan catabolic process mannan endo-1,4-beta-mannosidase activity base-excision repair nucleotidyltransferase activity Base excision repair Fructose and mannose metabolism Glycerophospholipid metabolism RNA degradation methylation | details |
| CFinderADM001150 | megagametogenesis maturation of SSU-rRNA Mpp10 complex small nucleolar ribonucleoprotein complex nuclear envelope pollen tube post-embryonic development cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 RNA secondary structure unwinding rRNA processing cellulase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc viral nucleocapsid Transcription_related, Transcription factor: C3H small-subunit processome ATP-dependent RNA helicase activity Ribosome biogenesis in eukaryotes RNA transport nucleic acid binding | details |
| CFinderADM001332 | signaling receptor activity protein histidine kinase activity Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase formation of glycosidic bonds, GlycosylTransferases: GTnc protein autophosphorylation phosphorelay signal transduction system membrane part MAPK signaling pathway - plant adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 intracellular plasmodesma protein serine/threonine kinase activity protein phosphorylation integral component of membrane | details |
| CFinderADM001487 | lysyl-tRNA aminoacylation lysine-tRNA ligase activity maturation of SSU-rRNA positive regulation of flower development mRNA polyadenylation small nucleolar ribonucleoprotein complex Mpp10 complex nuclear envelope Transcription_related, Transcription factor: C3H cytoplasm viral nucleocapsid metal ion binding small-subunit processome Aminoacyl-tRNA biosynthesis mRNA surveillance pathway Ribosome biogenesis in eukaryotes RNA transport nucleic acid binding | details |
| CFinderADM001957 | maturation of SSU-rRNA small nucleolar ribonucleoprotein complex Mpp10 complex Ubiquitin_Proteasome_system, E3 adaptor: BTB viral nucleocapsid Ribosome biogenesis in eukaryotes small-subunit processome | details |
| CFinderADM002043 | heterochromatin assembly transcription regulatory region sequence-specific DNA binding chromatin silencing complex chromatin chromatin silencing Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: bZIP protein autophosphorylation chromatin binding microtubule response to oxidative stress adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 plasmodesma sequence-specific DNA binding | details |
| CFinderADM002104 | mannose-1-phosphate guanylyltransferase (GDP) activity racemase and epimerase activity, acting on carbohydrates and derivatives UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Hedgehog signaling pathway GDP-mannose biosynthesis Transcription_related, Transcription regulator: TRAF UDP-sugars interconversion L-ascorbate biosynthesis I (L-galactose pathway) cellulose synthase (UDP-forming) activity nucleotidyltransferase activity coenzyme binding Fructose and mannose metabolism Ubiquitin_Proteasome_system, E3 adaptor: BTB biosynthetic process cellulose biosynthetic process Amino sugar and nucleotide sugar metabolism RNA degradation integral component of membrane cell wall organization carbohydrate metabolic process | details |
| CFinderADM002232 | response to radiation Nucleotide excision repair small nucleolar ribonucleoprotein complex Mpp10 complex maturation of SSU-rRNA endonuclease activity cellulase activity damaged DNA binding cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc viral nucleocapsid nucleic acid phosphodiester bond hydrolysis DNA repair Ribosome biogenesis in eukaryotes small-subunit processome integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |