CFinderADM000395's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP716A | 9.39E-05 | CYP450 family |
| RNA degradation | 0.003261502 | KEGG pathway |
| plant-type cell wall organization | 0.006076128 | GO:0009664 |
| nucleotidyltransferase activity | 0.006935846 | GO:0016779 |
| ubiquitin-dependent protein catabolic process | 0.009168207 | GO:0006511 |
| protein ubiquitination | 0.023299519 | GO:0016567 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 0.032819052 | GO:0016705 |
| monooxygenase activity | 0.032819052 | GO:0004497 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004096 | - | - |
| CRO_T011273 | AT5G36140 (2.00E-97) | CYP716A2|cytochrome P450, family 716, subfamily A, polypeptide 2 |
| CRO_T014139 | AT4G00060 (2.00E-18) | MEE44|maternal effect embryo arrest 44 |
| CRO_T015652 | - | - |
| CRO_T019427 | - | - |
| CRO_T022424 | AT1G68180 (6.00E-22) | RING/U-box superfamily protein |
| CRO_T023801 | - | - |
| CRO_T025030 | AT2G03090 (3.00E-100) | ATEXPA15|expansin A15; EXP15|EXPANSIN 15 |
| CRO_T026590 | AT4G24840 (1.00E-112) | unknown protein |
| CRO_T032281 | - | - |
| CRO_T033767 | AT5G46090 (2.00E-27) | Protein of unknown function (DUF679) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000001 | monovalent cation:proton antiporter activity regulation of pH endomembrane system cation transport Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase peptidyl-serine phosphorylation proteasome-mediated ubiquitin-dependent protein catabolic process hydrogen ion transmembrane transport intracellular signal transduction ubiquitin protein ligase activity kinase activity intracellular phosphorylation transmembrane transport protein serine/threonine kinase activity metal ion binding membrane ATP binding integral component of membrane | details |
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001026 | phosphoethanolamine N-methyltransferase activity phosphatidylcholine biosynthetic process phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV phosphatidylcholine biosynthesis II DNA-3-methyladenine glycosylase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc choline biosynthesis I mannan catabolic process mannan endo-1,4-beta-mannosidase activity base-excision repair nucleotidyltransferase activity Base excision repair Fructose and mannose metabolism Glycerophospholipid metabolism RNA degradation methylation | details |
| CFinderADM001415 | 26,27-dehydrozymosterol metabolism plasmodesma SUMO activating enzyme complex SUMO activating enzyme activity small nucleolar ribonucleoprotein complex maturation of SSU-rRNA steroid biosynthetic process protein sumoylation Mpp10 complex Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase Ubiquitin_Proteasome_system, E1: ThiF plant sterol biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc viral nucleocapsid nucleotidyltransferase activity protein autophosphorylation Steroid biosynthesis S-adenosylmethionine-dependent methyltransferase activity small-subunit processome Ribosome biogenesis in eukaryotes RNA degradation Ubiquitin mediated proteolysis embryo development ending in seed dormancy methylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein serine/threonine kinase activity integral component of membrane | details |
| CFinderADM002071 | lysyl-tRNA aminoacylation lysine-tRNA ligase activity ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction Aminoacyl-tRNA biosynthesis Endocytosis protein ubiquitination GTP binding Ubiquitin_Proteasome_system, E3: RING nucleic acid binding hydrolase activity intracellular | details |
| CFinderADM002104 | mannose-1-phosphate guanylyltransferase (GDP) activity racemase and epimerase activity, acting on carbohydrates and derivatives UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Hedgehog signaling pathway GDP-mannose biosynthesis Transcription_related, Transcription regulator: TRAF UDP-sugars interconversion L-ascorbate biosynthesis I (L-galactose pathway) cellulose synthase (UDP-forming) activity nucleotidyltransferase activity coenzyme binding Fructose and mannose metabolism Ubiquitin_Proteasome_system, E3 adaptor: BTB biosynthetic process cellulose biosynthetic process Amino sugar and nucleotide sugar metabolism RNA degradation integral component of membrane cell wall organization carbohydrate metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |