CFinderADM002104's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mannose-1-phosphate guanylyltransferase (GDP) activity | 2.96E-05 | GO:0008928 |
| racemase and epimerase activity, acting on carbohydrates and derivatives | 2.96E-05 | GO:0016857 |
| UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) | 7.25E-05 | plantCyc |
| Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box | 0.000104919 | ubs family |
| Hedgehog signaling pathway | 0.000124179 | KEGG pathway |
| GDP-mannose biosynthesis | 0.0001344 | plantCyc |
| Transcription_related, Transcription regulator: TRAF | 0.000139694 | TF family |
| UDP-sugars interconversion | 0.000196152 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.000198592 | plantCyc |
| cellulose synthase (UDP-forming) activity | 0.000795741 | GO:0016760 |
| nucleotidyltransferase activity | 0.00087339 | GO:0016779 |
| coenzyme binding | 0.000914876 | GO:0050662 |
| Fructose and mannose metabolism | 0.001019911 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.001314441 | ubs family |
| biosynthetic process | 0.001769523 | GO:0009058 |
| cellulose biosynthetic process | 0.001769523 | GO:0030244 |
| Amino sugar and nucleotide sugar metabolism | 0.002814881 | KEGG pathway |
| RNA degradation | 0.002814881 | KEGG pathway |
| integral component of membrane | 0.00393097 | GO:0016021 |
| cell wall organization | 0.007865614 | GO:0071555 |
| carbohydrate metabolic process | 0.024766941 | GO:0005975 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000491 | AT2G21770 (1.00E-79) | CESA9|cellulose synthase A9 |
| CRO_T004165 | AT2G32280 (9.00E-52) | VCC|VASCULATURE COMPLEXITY AND CONNECTIVITY |
| CRO_T010353 | AT4G23920 (2.00E-23) | ATUGE2|UDP-GLC 4-EPIMERASE 2; UGE2|UDP-D-glucose/UDP-D-galactose 4-epimerase 2 |
| CRO_T014139 | AT4G00060 (2.00E-18) | MEE44|maternal effect embryo arrest 44 |
| CRO_T019200 | AT1G01640 (4.00E-12) | BTB/POZ domain-containing protein |
| CRO_T021034 | AT2G39770 (0) | CYT1|CYTOKINESIS DEFECTIVE 1; EMB101|EMBRYO DEFECTIVE 101; GMP1|GDP-MANNOSE PYROPHOSPHORYLASE 1; SOZ1|SENSITIVE TO OZONE 1; VTC1|VITAMIN C DEFECTIVE 1 |
| CRO_T029453 | AT5G37570 (6.00E-162) | Pentatricopeptide repeat (PPR-like) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000395 | Cytochrome_P450, Cytochrome P450: CYP716A RNA degradation plant-type cell wall organization nucleotidyltransferase activity ubiquitin-dependent protein catabolic process protein ubiquitination oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity | details |
| CFinderADM000759 | mRNA (guanine-N7-)-methyltransferase activity glucuronosyltransferase activity mRNA cap binding complex regulation of defense response RNA (guanine-N7)-methylation 7-methylguanosine mRNA capping xylan biosynthetic process Hedgehog signaling pathway Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box plant-type secondary cell wall biogenesis Transcription_related, Transcription regulator: TRAF Fatty acid elongation formation of glycosidic bonds, GlycosylTransferases: GTnc transferase activity, transferring acyl groups other than amino-acyl groups very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Ubiquitin_Proteasome_system, E3 adaptor: BTB fatty acid biosynthetic process mRNA surveillance pathway Golgi apparatus | details |
| CFinderADM001019 | protein catabolic process aspartic-type endopeptidase activity proteolysis cellulose synthase (UDP-forming) activity cellulose biosynthetic process RNA degradation cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001026 | phosphoethanolamine N-methyltransferase activity phosphatidylcholine biosynthetic process phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV phosphatidylcholine biosynthesis II DNA-3-methyladenine glycosylase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc choline biosynthesis I mannan catabolic process mannan endo-1,4-beta-mannosidase activity base-excision repair nucleotidyltransferase activity Base excision repair Fructose and mannose metabolism Glycerophospholipid metabolism RNA degradation methylation | details |
| CFinderADM001415 | 26,27-dehydrozymosterol metabolism plasmodesma SUMO activating enzyme complex SUMO activating enzyme activity small nucleolar ribonucleoprotein complex maturation of SSU-rRNA steroid biosynthetic process protein sumoylation Mpp10 complex Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase Ubiquitin_Proteasome_system, E1: ThiF plant sterol biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc viral nucleocapsid nucleotidyltransferase activity protein autophosphorylation Steroid biosynthesis S-adenosylmethionine-dependent methyltransferase activity small-subunit processome Ribosome biogenesis in eukaryotes RNA degradation Ubiquitin mediated proteolysis embryo development ending in seed dormancy methylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein serine/threonine kinase activity integral component of membrane | details |
| CFinderADM002022 | 5'-nucleotidase activity guanosine nucleotides degradation I guanosine nucleotides degradation II Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX pyrimidine salvage pathway Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase adenosine nucleotides degradation I adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: ERF dephosphorylation binding transcription factor activity, sequence-specific DNA binding protein kinase activity transcription, DNA-templated | details |
| CFinderADM002071 | lysyl-tRNA aminoacylation lysine-tRNA ligase activity ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction Aminoacyl-tRNA biosynthesis Endocytosis protein ubiquitination GTP binding Ubiquitin_Proteasome_system, E3: RING nucleic acid binding hydrolase activity intracellular | details |
| CFinderADM002214 | NatC complex mRNA cap binding complex mRNA (guanine-N7-)-methyltransferase activity 7-methylguanosine mRNA capping RNA (guanine-N7)-methylation lipid transport Transcription_related, Transcription regulator: GNAT N-terminal protein amino acid acetylation peptide alpha-N-acetyltransferase activity lipid binding mRNA surveillance pathway integral component of membrane | details |
| CFinderADM002217 | mannose-1-phosphate guanylyltransferase (GDP) activity GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Fructose and mannose metabolism NF-kappa B signaling pathway Phenylpropanoid biosynthesis biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM002231 | Noc2p-Noc3p complex Noc1p-Noc2p complex viral replication complex formation and maintenance formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan 6-xylosyltransferase activity xyloglucan biosynthesis protein self-association ribosomal large subunit biogenesis nucleoplasm plant-type vacuole membrane response to oxidative stress cellular oxidant detoxification peroxidase activity nucleolus Golgi apparatus plasmodesma heme binding | details |
| CFinderADM002277 | asparaginyl-tRNA aminoacylation asparagine-tRNA ligase activity Hedgehog signaling pathway cell morphogenesis Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Transcription_related, Transcription regulator: TRAF cysteine-type peptidase activity Ubiquitin_Proteasome_system, DUB: USP cellular protein metabolic process Aminoacyl-tRNA biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: BTB proteolysis nucleic acid binding | details |
| CFinderADM002278 | L-gulonolactone oxidase activity D-arabinono-1,4-lactone oxidase activity calcium-dependent phospholipid binding cellulose synthase (UDP-forming) activity zinc ion binding plasma membrane Transcription_related, Transcription factor: C3H cellulose biosynthetic process transferase activity, transferring glycosyl groups flavin adenine dinucleotide binding cell wall organization calcium ion binding Ubiquitin_Proteasome_system, E3: RING integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |