CFinderADM001426's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glucan 1,3-alpha-glucosidase activity | 8.48E-06 | GO:0033919 |
| histone acetyltransferase binding | 8.48E-06 | GO:0035035 |
| ribonucleoprotein complex binding | 1.13E-05 | GO:0043021 |
| transcription factor binding | 1.13E-05 | GO:0008134 |
| nuclear export signal receptor activity | 1.13E-05 | GO:0005049 |
| regulation of rRNA processing | 1.59E-05 | GO:2000232 |
| defense response signaling pathway, resistance gene-dependent | 1.59E-05 | GO:0009870 |
| maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.59E-05 | GO:0000466 |
| RNA polymerase II transcriptional preinitiation complex assembly | 1.59E-05 | GO:0051123 |
| protein export from nucleus | 1.91E-05 | GO:0006611 |
| PeBoW complex | 3.39E-05 | GO:0070545 |
| mRNA export from nucleus | 3.83E-05 | GO:0006406 |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.10E-05 | GO:0000463 |
| transcription factor TFIID complex | 4.24E-05 | GO:0005669 |
| transcription regulatory region DNA binding | 0.000123304 | GO:0044212 |
| transcription coactivator activity | 0.000123304 | GO:0003713 |
| nuclear membrane | 0.000124228 | GO:0031965 |
| nuclear envelope | 0.000169295 | GO:0005635 |
| Ran GTPase binding | 0.000178268 | GO:0008536 |
| protein import into nucleus | 0.000201168 | GO:0006606 |
| nucleoplasm | 0.000282473 | GO:0005654 |
| nuclear pore | 0.000282473 | GO:0005643 |
| preribosome, large subunit precursor | 0.000282473 | GO:0030687 |
| Basal transcription factors | 0.000789706 | KEGG pathway |
| N-Glycan biosynthesis | 0.000789706 | KEGG pathway |
| regulation of transcription from RNA polymerase II promoter | 0.000807459 | GO:0006357 |
| response to auxin | 0.000807459 | GO:0009733 |
| carbohydrate binding | 0.001941651 | GO:0030246 |
| RNA transport | 0.00442987 | KEGG pathway |
| carbohydrate metabolic process | 0.010363766 | GO:0005975 |
| plasmodesma | 0.010714829 | GO:0009506 |
| RNA binding | 0.012263805 | GO:0003723 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004154 | AT5G63840 (5.00E-97) | PSL5|PRIORITY IN SWEET LIFE 5; RSW3|RADIAL SWELLING 3 |
| CRO_T004396 | AT5G14520 (0) | PES|PESCADILLO |
| CRO_T012406 | AT1G55300 (2.00E-56) | TAF7|TBP-associated factor 7 |
| CRO_T018153 | AT2G31660 (5.00E-09) | EMA1|enhanced miRNA activity 1; SAD2|SUPER SENSITIVE TO ABA AND DROUGHT2; URM9|UNARMED 9 |
| CRO_T022751 | AT1G80680 (0) | MOS3|MODIFIER OF SNC1,3; PRE|PRECOCIOUS; SAR3|SUPPRESSOR OF AUXIN RESISTANCE 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001173 | histone acetyltransferase binding H3 histone acetyltransferase activity histone H3 acetylation root morphogenesis RNA polymerase II transcriptional preinitiation complex assembly transcription factor binding DNA topoisomerase activity histone acetyltransferase complex transcription factor TFIID complex chloroplast RNA processing Notch signaling pathway Transcription_related, Transcription regulator: GNAT adenosine ribonucleotides de novo biosynthesis transcription coactivator activity transcription regulatory region DNA binding response to light stimulus flower development Basal transcription factors Peroxisome regulation of transcription from RNA polymerase II promoter chloroplast unfolded protein binding zinc ion binding embryo development ending in seed dormancy protein folding ATP binding | details |
| CFinderADM001427 | glucan 1,3-alpha-glucosidase activity histone acetyltransferase binding positive regulation of translation maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) regulation of rRNA processing RNA polymerase II transcriptional preinitiation complex assembly ribonucleoprotein complex binding transcription factor binding PeBoW complex transcription factor TFIID complex maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) vacuolar transport transcription coactivator activity transcription regulatory region DNA binding preribosome, large subunit precursor nucleoplasm ribosome binding mitochondrial matrix Basal transcription factors N-Glycan biosynthesis regulation of transcription from RNA polymerase II promoter Endocytosis carbohydrate binding GTPase activity GTP binding intracellular carbohydrate metabolic process RNA binding translation | details |
| CFinderADM001498 | N-Glycan biosynthesis carbohydrate binding inosine-5'-phosphate biosynthesis II eukaryotic translation initiation factor 2B complex glucan 1,3-alpha-glucosidase activity phosphoribosylaminoimidazolesuccinocarboxamide synthase activity phosphoribosylaminoimidazole carboxylase activity alpha-1,4-glucosidase activity maltose alpha-glucosidase activity guanyl-nucleotide exchange factor activity maltose metabolic process negative regulation of translational initiation adenine biosynthetic process S-methyl-5-thioribose-1-phosphate isomerase activity L-methionine biosynthetic process from methylthioadenosine 'de novo' IMP biosynthetic process positive regulation of GTPase activity Purine metabolism RNA transport carbohydrate metabolic process | details |
| CFinderADM001528 | protein folding in endoplasmic reticulum defense response signaling pathway, resistance gene-dependent mRNA export from nucleus ER membrane protein complex Transcription_related, Transcription regulator: HMG nuclear membrane nuclear pore response to auxin RNA transport vacuolar membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box Golgi apparatus | details |
| CFinderADM001894 | histone acetyltransferase binding glucan 1,3-alpha-glucosidase activity transcription factor binding RNA polymerase II transcriptional preinitiation complex assembly transcription factor TFIID complex vacuolar transport potassium ion binding pyruvate kinase activity transcription coactivator activity transcription regulatory region DNA binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process regulation of transcription from RNA polymerase II promoter Basal transcription factors N-Glycan biosynthesis carbohydrate binding magnesium ion binding Endocytosis Ribosome kinase activity carbohydrate metabolic process intracellular translation Carbon metabolism structural constituent of ribosome | details |
| CFinderADM002153 | glucan 1,3-alpha-glucosidase activity asparaginase activity DNA replication factor A complex L-asparagine degradation I superpathway of aspartate and asparagine biosynthesis calcium-mediated signaling Cul4-RING E3 ubiquitin ligase complex Prp19 complex signal transducer activity precatalytic spliceosome catalytic step 2 spliceosome unfolded protein binding N-Glycan biosynthesis mRNA splicing, via spliceosome carbohydrate binding protein folding Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD plasmodesma carbohydrate metabolic process intracellular | details |
| CFinderADM002273 | nuclear export signal receptor activity protein export from nucleus protein import into nucleus nuclear envelope Ran GTPase binding RNA processing plasmodesma nucleic acid binding nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |