CFinderADM002153's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glucan 1,3-alpha-glucosidase activity | 1.01E-05 | GO:0033919 |
| asparaginase activity | 1.69E-05 | GO:0004067 |
| DNA replication factor A complex | 1.87E-05 | GO:0005662 |
| L-asparagine degradation I | 2.02E-05 | plantCyc |
| superpathway of aspartate and asparagine biosynthesis | 7.33E-05 | plantCyc |
| calcium-mediated signaling | 0.000112602 | GO:0019722 |
| Cul4-RING E3 ubiquitin ligase complex | 0.000136898 | GO:0080008 |
| Prp19 complex | 0.000136898 | GO:0000974 |
| signal transducer activity | 0.000336083 | GO:0004871 |
| precatalytic spliceosome | 0.00035865 | GO:0071011 |
| catalytic step 2 spliceosome | 0.000654398 | GO:0071013 |
| unfolded protein binding | 0.001286043 | GO:0051082 |
| N-Glycan biosynthesis | 0.001310402 | KEGG pathway |
| mRNA splicing, via spliceosome | 0.001520604 | GO:0000398 |
| carbohydrate binding | 0.002117764 | GO:0030246 |
| protein folding | 0.004814612 | GO:0006457 |
| Spliceosome | 0.006597329 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.006814659 | ubs family |
| plasmodesma | 0.01432087 | GO:0009506 |
| carbohydrate metabolic process | 0.014510802 | GO:0005975 |
| intracellular | 0.014906058 | GO:0005622 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000432 | AT2G05590 (3.00E-34) | TLD-domain containing nucleolar protein |
| CRO_T004154 | AT5G63840 (5.00E-97) | PSL5|PRIORITY IN SWEET LIFE 5; RSW3|RADIAL SWELLING 3 |
| CRO_T016943 | AT2G41500 (1.00E-20) | LIS|LACHESIS |
| CRO_T017989 | AT5G08100 (1.00E-108) | ASPGA1|asparaginase A1 |
| CRO_T026174 | AT4G15800 (9.00E-27) | RALFL33|ralf-like 33 |
| CRO_T033717 | AT3G62600 (2.00E-18) | ATERDJ3B; ERDJ3B|DNAJ heat shock family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001158 | calcium-mediated signaling signal transducer activity Ubiquitin_Proteasome_system, E3: U-box ligase activity ubiquitin-protein transferase activity protein ubiquitination intracellular plasmodesma | details |
| CFinderADM001353 | L-asparagine degradation I Sulfur relay system asparaginase activity superpathway of aspartate and asparagine biosynthesis tRNA modification RNA degradation ATPase activity phosphorylation kinase activity binding transferase activity cytosol | details |
| CFinderADM001426 | glucan 1,3-alpha-glucosidase activity histone acetyltransferase binding ribonucleoprotein complex binding transcription factor binding nuclear export signal receptor activity regulation of rRNA processing defense response signaling pathway, resistance gene-dependent maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) RNA polymerase II transcriptional preinitiation complex assembly protein export from nucleus PeBoW complex mRNA export from nucleus maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) transcription factor TFIID complex transcription regulatory region DNA binding transcription coactivator activity nuclear membrane nuclear envelope Ran GTPase binding protein import into nucleus nucleoplasm nuclear pore preribosome, large subunit precursor Basal transcription factors N-Glycan biosynthesis regulation of transcription from RNA polymerase II promoter response to auxin carbohydrate binding RNA transport carbohydrate metabolic process plasmodesma RNA binding | details |
| CFinderADM001427 | glucan 1,3-alpha-glucosidase activity histone acetyltransferase binding positive regulation of translation maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) regulation of rRNA processing RNA polymerase II transcriptional preinitiation complex assembly ribonucleoprotein complex binding transcription factor binding PeBoW complex transcription factor TFIID complex maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) vacuolar transport transcription coactivator activity transcription regulatory region DNA binding preribosome, large subunit precursor nucleoplasm ribosome binding mitochondrial matrix Basal transcription factors N-Glycan biosynthesis regulation of transcription from RNA polymerase II promoter Endocytosis carbohydrate binding GTPase activity GTP binding intracellular carbohydrate metabolic process RNA binding translation | details |
| CFinderADM001430 | calcium-mediated signaling signal transducer activity intracellular plasmodesma transferase activity | details |
| CFinderADM001498 | N-Glycan biosynthesis carbohydrate binding inosine-5'-phosphate biosynthesis II eukaryotic translation initiation factor 2B complex glucan 1,3-alpha-glucosidase activity phosphoribosylaminoimidazolesuccinocarboxamide synthase activity phosphoribosylaminoimidazole carboxylase activity alpha-1,4-glucosidase activity maltose alpha-glucosidase activity guanyl-nucleotide exchange factor activity maltose metabolic process negative regulation of translational initiation adenine biosynthetic process S-methyl-5-thioribose-1-phosphate isomerase activity L-methionine biosynthetic process from methylthioadenosine 'de novo' IMP biosynthetic process positive regulation of GTPase activity Purine metabolism RNA transport carbohydrate metabolic process | details |
| CFinderADM001844 | Degradation of aromatic compounds calcium-mediated signaling tRNA wobble uridine modification alcohol dehydrogenase (NAD) activity acetaldehyde biosynthesis I pyruvate fermentation to ethanol II DNA helicase activity signal transducer activity organic cyclic compound binding heterocyclic compound binding hydrolase activity, acting on ester bonds cellular process oxidation-reduction process flavin adenine dinucleotide binding plasmodesma intracellular oxidoreductase activity | details |
| CFinderADM001894 | histone acetyltransferase binding glucan 1,3-alpha-glucosidase activity transcription factor binding RNA polymerase II transcriptional preinitiation complex assembly transcription factor TFIID complex vacuolar transport potassium ion binding pyruvate kinase activity transcription coactivator activity transcription regulatory region DNA binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process regulation of transcription from RNA polymerase II promoter Basal transcription factors N-Glycan biosynthesis carbohydrate binding magnesium ion binding Endocytosis Ribosome kinase activity carbohydrate metabolic process intracellular translation Carbon metabolism structural constituent of ribosome | details |
| CFinderADM002101 | plant organ development anatomical structure morphogenesis tissue development cellular response to stimulus regulation of response to stimulus response to organic substance response to bacterium response to osmotic stress defense response to other organism single-organism cellular process regulation of cellular process MAPK signaling pathway - plant Transcription_related, Transcription factor: C2H2 transport Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM002152 | DNA replication factor A complex Prp19 complex Cul4-RING E3 ubiquitin ligase complex precatalytic spliceosome mRNA splicing, via spliceosome catalytic step 2 spliceosome SNARE interactions in vesicular transport Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM002308 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides interstrand cross-link repair nuclease activity DNA binding zinc ion binding Fanconi anemia pathway nucleic acid phosphodiester bond hydrolysis Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING chloroplast | details |
Expression profiles
 Show details about module gene expression profiling |