CFinderADM001431's detailed annotation
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
myricetin 3'-O-methyltransferase activity | 6.92E-05 | GO:0033799 |
11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity | 6.92E-05 | GO:0030766 |
Stilbenoid, diarylheptanoid and gingerol biosynthesis | 7.05E-05 | KEGG pathway |
aromatic compound biosynthetic process | 0.000201978 | GO:0019438 |
alkaloid biosynthetic process | 0.000201978 | GO:0009821 |
syringetin biosynthesis | 0.000457857 | plantCyc |
phenylpropanoids methylation (ice plant) | 0.000518175 | plantCyc |
protein homodimerization activity | 0.000768886 | GO:0042803 |
methylation | 0.005770626 | GO:0032259 |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T006414 | AT5G09570 (1.00E-32) | Cox19-like CHCH family protein |
CRO_T007007 | AT1G73875 (2.00E-26) | DNAse I-like superfamily protein |
CRO_T019314 | AT5G54160 (4.00E-45) | ATOMT1|O-methyltransferase 1; COMT1|caffeate O-methyltransferase 1 |
CRO_T021652 | AT5G47120 (6.00E-78) | ATBI-1|ARABIDOPSIS BAX INHIBITOR 1; ATBI1|BAX inhibitor 1 |
CRO_T023306 | AT5G16420 (1.00E-22) | Pentatricopeptide repeat (PPR-like) superfamily protein |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
CFinderADM000711 | Influenza A uroporphyrinogen-III synthase activity UDP-galactose transmembrane transporter activity formamidase activity UDP-glucose transmembrane transporter activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides root hair cell development UDP-galactose transmembrane transport production of miRNAs involved in gene silencing by miRNA aging histone H4-K5 acetylation regulation of timing of transition from vegetative to reproductive phase ncRNA processing lateral root development tetrapyrrole biosynthetic process UDP-glucose transport NuA4 histone acetyltransferase complex nuclear pore inner ring nuclear pore organization shoot system development reproductive structure development protein import into nucleus, docking Carbon metabolism Stilbenoid, diarylheptanoid and gingerol biosynthesis structural constituent of nuclear pore myricetin 3'-O-methyltransferase activity 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity single organism reproductive process regulation of flower development alkaloid biosynthetic process cytokinins 7-N-glucoside biosynthesis cytokinins 9-N-glucoside biosynthesis aromatic compound biosynthetic process cellular response to oxidative stress sulfate assimilation oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Transcription_related, Transcription factor: PLATZ quercetin glucoside biosynthesis (Allium) Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: PHD Ubiquitin_Proteasome_system, E3: RING syringetin biosynthesis quercetin gentiotetraside biosynthesis phenylpropanoids methylation (ice plant) protein disulfide oxidoreductase activity protein homodimerization activity quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity cell redox homeostasis regulation of transcription, DNA-templated flavonoid glucuronidation Transcription_related, Transcription factor: NAC flavonoid biosynthetic process intracellular signal transduction | details |
CFinderADM001158 | calcium-mediated signaling signal transducer activity Ubiquitin_Proteasome_system, E3: U-box ligase activity ubiquitin-protein transferase activity protein ubiquitination intracellular plasmodesma | details |
CFinderADM001174 | glucose catabolic process protein targeting RIG-I-like receptor signaling pathway spindle assembly Transcriptional misregulation in cancers microtubule minus-end binding thiol-dependent ubiquitin-specific protease activity spindle microtubule HAUS complex protein deubiquitination Ubiquitin_Proteasome_system, DUB: OTU nucleosome formation of glycosidic bonds, GlycosylTransferases: GTnc protein heterodimerization activity trans-Golgi network endosome | details |
CFinderADM001250 | Pwp2p-containing subcomplex of 90S preribosome nucleotide-excision repair snoRNA binding damaged DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) proteasome-mediated ubiquitin-dependent protein catabolic process small-subunit processome Ribosome biogenesis in eukaryotes Protein processing in endoplasmic reticulum | details |
CFinderADM001796 | regulation of microtubule-based process cytoskeleton-dependent intracellular transport protein localization ATP-dependent microtubule motor activity, plus-end-directed proteasome core complex, alpha-subunit complex threonine-type endopeptidase activity Proteasome root development microtubule-based movement kinesin complex microtubule binding ubiquitin-dependent protein catabolic process microtubule | details |
CFinderADM002012 | Transcription_related, Transcription factor: C2H2 mitochondrion nucleic acid binding | details |
CFinderADM002088 | cytoskeleton-dependent intracellular transport protein localization regulation of microtubule-based process ATP-dependent microtubule motor activity, plus-end-directed root development microtubule-based movement kinesin complex microtubule binding microtubule RNA transport | details |
Expression profiles
Show details about module gene expression profiling |