CFinderADM001250's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Pwp2p-containing subcomplex of 90S preribosome | 3.23E-05 | GO:0034388 |
| nucleotide-excision repair | 6.35E-05 | GO:0006289 |
| snoRNA binding | 9.79E-05 | GO:0030515 |
| damaged DNA binding | 9.79E-05 | GO:0003684 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.000322463 | GO:0000462 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.000631038 | GO:0043161 |
| small-subunit processome | 0.000979615 | GO:0032040 |
| Ribosome biogenesis in eukaryotes | 0.002362519 | KEGG pathway |
| Protein processing in endoplasmic reticulum | 0.007486944 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004564 | AT5G40520 (3.00E-07) | unknown protein |
| CRO_T010409 | AT4G28200 (7.00E-129) | unknown protein |
| CRO_T023306 | AT5G16420 (1.00E-22) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T025492 | AT3G06290 (7.00E-176) | SAC3B|yeast Sac3 homolog B |
| CRO_T033754 | AT1G16190 (8.00E-47) | RAD23A|RADIATION SENSITIVE23A |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001249 | Pwp2p-containing subcomplex of 90S preribosome nucleotide-excision repair snoRNA binding damaged DNA binding isomerase activity photosynthesis, light reaction maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) membrane part proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: SKP1 small-subunit processome Photosynthesis Ribosome biogenesis in eukaryotes plastid protein folding Protein processing in endoplasmic reticulum | details |
| CFinderADM001431 | myricetin 3'-O-methyltransferase activity 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity Stilbenoid, diarylheptanoid and gingerol biosynthesis aromatic compound biosynthetic process alkaloid biosynthetic process syringetin biosynthesis phenylpropanoids methylation (ice plant) protein homodimerization activity methylation | details |
| CFinderADM002012 | Transcription_related, Transcription factor: C2H2 mitochondrion nucleic acid binding | details |
| CFinderADM002019 | cytidine to uridine editing Transcription_related, Transcription factor: Alfin-like nucleotide-excision repair hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc damaged DNA binding histone binding beta-galactosidase activity Galactose metabolism proteasome-mediated ubiquitin-dependent protein catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein processing in endoplasmic reticulum carbohydrate metabolic process nucleic acid binding regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |