CFinderADM001451's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphopantetheine binding | 1.71E-05 | GO:0031177 |
| poly(A) RNA binding | 0.000255419 | GO:0044822 |
| fatty acid biosynthetic process | 0.000738319 | GO:0006633 |
| RNA processing | 0.000738319 | GO:0006396 |
| ATP-dependent RNA helicase activity | 0.001137264 | GO:0004004 |
| Spliceosome | 0.003260414 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.005102114 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000139 | AT1G26370 (2.00E-65) | RID1|ROOT INITIATION DEFECTIVE 1 |
| CRO_T000483 | AT1G54580 (1.00E-27) | ACP2|acyl carrier protein 2 |
| CRO_T012431 | AT4G29870 (1.00E-51) | Oligosaccharyltransferase complex/magnesium transporter family protein |
| CRO_T012557 | AT1G59780 (1.00E-41) | NB-ARC domain-containing disease resistance protein |
| CRO_T024497 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000666 | RNA degradation heterocyclic compound binding organic cyclic compound binding | details |
| CFinderADM000761 | auxin efflux transmembrane transporter activity auxin homeostasis auxin efflux protein polyubiquitination auxin polar transport auxin-activated signaling pathway pollen development protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process integral component of membrane ubiquitin protein ligase activity endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING transmembrane transport | details |
| CFinderADM000847 | NatB complex nucleoside-triphosphatase activity N-terminal peptidyl-methionine acetylation fruit morphogenesis negative regulation of anthocyanin metabolic process organ growth 5-carbamoylmethyl uridine residue modification regulation of abscisic acid-activated signaling pathway cellular response to abscisic acid stimulus regulation of auxin mediated signaling pathway Elongator holoenzyme complex positive regulation of cell proliferation tRNA wobble uridine modification regulation of leaf development cytoskeletal part microtubule cytoskeleton cell proliferation leaf morphogenesis peptide alpha-N-acetyltransferase activity hydroquinone:oxygen oxidoreductase activity lignin catabolic process single-organism cellular process copper ion binding apoplast response to oxidative stress Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated nucleotide binding regulation of transcription, DNA-templated | details |
| CFinderADM000924 | rosmarinic acid biosynthesis II rosmarinic acid biosynthesis I positive regulation of biological process oxidative photosynthetic carbon pathway hydroxyphenylpyruvate reductase activity lipid transporter activity hydroxypyruvate reductase activity glyoxylate reductase (NADP) activity response to far red light red or far-red light signaling pathway 4-hydroxybenzoate biosynthesis I (eukaryotes) formation of glycosidic bonds, GlycosylTransferases: GTnc cysteine-type peptidase activity lipid transport Ubiquitin_Proteasome_system, DUB: ULP poly(A) RNA binding Lysosome ATP-dependent RNA helicase activity NAD binding RNA processing Transcription_related, Transcription factor: FAR1 Spliceosome Carbon metabolism | details |
| CFinderADM001003 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glucosylceramidase activity glucosylceramide catabolic process Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Sphingolipid metabolism Wnt signaling pathway regulation of cell shape Endocytosis peptidyl-serine phosphorylation oxidoreductase activity protein serine/threonine kinase activity | details |
| CFinderADM001225 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process sphingolipid biosynthesis (plants) ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity phosphorylation zinc ion binding | details |
| CFinderADM001357 | lipid transporter activity lipid transport poly(A) RNA binding Lysosome RNA processing integral component of membrane ATP-dependent RNA helicase activity Spliceosome formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001358 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase cytosol long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Calcium signaling pathway sugar mediated signaling pathway anion transport mitochondrial outer membrane response to wounding regulation of anion transmembrane transport cytoplasmic, membrane-bounded vesicle cytoplasmic mRNA processing body voltage-gated anion channel activity salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex regulation of translational initiation formation of translation preinitiation complex defense response to bacterium ribosome binding RNA transport organic cyclic compound binding helicase activity heterocyclic compound binding translation initiation factor activity plasmodesma | details |
| CFinderADM001429 | protein kinase CK2 complex transcription factor TFIID complex peroxisomal membrane regulation of ethylene-activated signaling pathway peroxisome organization organelle organization protein kinase regulator activity cytokinin-activated signaling pathway regulation of protein kinase activity response to starvation DNA-templated transcription, initiation autophagy Ubiquitin_Proteasome_system, E2: UBC jasmonic acid mediated signaling pathway Autophagy - animal Basal transcription factors Peroxisome SNARE interactions in vesicular transport single-organism cellular process translational initiation Ribosome biogenesis in eukaryotes protein heterodimerization activity translation initiation factor activity cytoplasmic part kinase activity phosphorylation | details |
| CFinderADM001545 | detection of calcium ion regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 phosphopantetheine binding regulation of photomorphogenesis calcium-mediated signaling Ras signaling pathway homogalacturonan degradation fatty acid biosynthetic process protein binding 2-alkenal reductase [NAD(P)] activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 calcium ion binding protein kinase activity protein phosphorylation | details |
| CFinderADM001587 | Transcription_related, Transcription regulator: MED6 RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly RNA polymerase II transcriptional preinitiation complex assembly Ubiquitin_Proteasome_system, E3 adaptor: Cullin core mediator complex cullin-RING ubiquitin ligase complex mediator complex ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process regulation of transcription from RNA polymerase II promoter ubiquitin protein ligase activity Protein processing in endoplasmic reticulum | details |
| CFinderADM001820 | brassinosteroid mediated signaling pathway Transcription_related, Transcription regulator: SNF2 poly(A) RNA binding phosphoprotein phosphatase activity RNA processing ATP-dependent RNA helicase activity protein dephosphorylation cytosolic large ribosomal subunit Spliceosome Ribosome translation structural constituent of ribosome | details |
| CFinderADM001828 | Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex regulation of membrane potential voltage-gated potassium channel activity potassium ion transmembrane transport ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Plant-pathogen interaction Protein processing in endoplasmic reticulum integral component of plasma membrane | details |
| CFinderADM001965 | Ribosome biogenesis in eukaryotes positive regulation of transcription from RNA polymerase I promoter t-UTP complex CCR4-NOT complex 90S preribosome RNA phosphodiester bond hydrolysis, exonucleolytic cellular component organization nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 3'-5'-exoribonuclease activity snoRNA binding Regulation of actin cytoskeleton maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) single-organism cellular process RNA degradation small-subunit processome intracellular membrane-bounded organelle transferase activity nucleic acid binding | details |
Expression profiles
 Show details about module gene expression profiling |