CFinderADM000924's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| rosmarinic acid biosynthesis II | 2.92E-05 | plantCyc |
| rosmarinic acid biosynthesis I | 5.11E-05 | plantCyc |
| positive regulation of biological process | 6.26E-05 | GO:0048518 |
| oxidative photosynthetic carbon pathway | 6.26E-05 | GO:0009854 |
| hydroxyphenylpyruvate reductase activity | 6.26E-05 | GO:0047995 |
| lipid transporter activity | 0.000104182 | GO:0005319 |
| hydroxypyruvate reductase activity | 0.000104182 | GO:0016618 |
| glyoxylate reductase (NADP) activity | 0.000109352 | GO:0030267 |
| response to far red light | 0.000145751 | GO:0010218 |
| red or far-red light signaling pathway | 0.000145751 | GO:0010017 |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 0.000247246 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000270164 | cazy family |
| cysteine-type peptidase activity | 0.000498303 | GO:0008234 |
| lipid transport | 0.000564543 | GO:0006869 |
| Ubiquitin_Proteasome_system, DUB: ULP | 0.000612872 | ubs family |
| poly(A) RNA binding | 0.001034825 | GO:0044822 |
| Lysosome | 0.003207069 | KEGG pathway |
| ATP-dependent RNA helicase activity | 0.005009348 | GO:0004004 |
| NAD binding | 0.005009348 | GO:0051287 |
| RNA processing | 0.005254074 | GO:0006396 |
| Transcription_related, Transcription factor: FAR1 | 0.007206822 | TF family |
| Spliceosome | 0.032620313 | KEGG pathway |
| Carbon metabolism | 0.040833593 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000139 | AT1G26370 (2.00E-65) | RID1|ROOT INITIATION DEFECTIVE 1 |
| CRO_T001946 | AT5G61990 (1.00E-48) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T002375 | AT1G09820 (3.00E-27) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T007939 | AT2G32250 (5.00E-22) | FRS2|FAR1-related sequence 2 |
| CRO_T009958 | AT1G42470 (3.00E-24) | Patched family protein |
| CRO_T012431 | AT4G29870 (1.00E-51) | Oligosaccharyltransferase complex/magnesium transporter family protein |
| CRO_T013308 | AT1G14770 (1.00E-10) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T021333 | AT3G19480 (3.00E-24) | PGDH3|phosphoglycerate dehydrogenase 3 |
| CRO_T028127 | - | - |
| CRO_T032260 | AT3G50160 (6.00E-32) | Plant protein of unknown function (DUF247) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000065 | regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion peptidase activity, acting on L-amino acid peptides modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of photomorphogenesis lipid transporter activity calcium-mediated signaling core promoter sequence-specific DNA binding Ubiquitin_Proteasome_system, DUB: ULP lipid transport transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Ras signaling pathway transcription from RNA polymerase II promoter Lysosome 2-alkenal reductase [NAD(P)] activity protein binding protein dimerization activity calcium ion binding | details |
| CFinderADM000666 | RNA degradation heterocyclic compound binding organic cyclic compound binding | details |
| CFinderADM000761 | auxin efflux transmembrane transporter activity auxin homeostasis auxin efflux protein polyubiquitination auxin polar transport auxin-activated signaling pathway pollen development protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process integral component of membrane ubiquitin protein ligase activity endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING transmembrane transport | details |
| CFinderADM000915 | diaminopimelate epimerase activity L-lysine biosynthesis VI pyruvate decarboxylation to acetyl CoA lysine biosynthetic process via diaminopimelate cell division Biosynthesis of amino acids Ubiquitin mediated proteolysis cytosolic large ribosomal subunit Ubiquitin_Proteasome_system, E3: RING structural constituent of ribosome translation Carbon metabolism Ribosome chloroplast stroma | details |
| CFinderADM001003 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glucosylceramidase activity glucosylceramide catabolic process Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Sphingolipid metabolism Wnt signaling pathway regulation of cell shape Endocytosis peptidyl-serine phosphorylation oxidoreductase activity protein serine/threonine kinase activity | details |
| CFinderADM001056 | oxidative photosynthetic carbon pathway 'de novo' AMP biosynthetic process adenylosuccinate synthase activity hydroxyphenylpyruvate reductase activity rosmarinic acid biosynthesis II rosmarinic acid biosynthesis I hydroxypyruvate reductase activity glyoxylate reductase (NADP) activity Carbon metabolism 4-hydroxybenzoate biosynthesis I (eukaryotes) pyruvate decarboxylation to acetyl CoA adenosine ribonucleotides de novo biosynthesis NAD binding magnesium ion binding Purine metabolism Spliceosome GTP binding | details |
| CFinderADM001130 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase cellular process formation of glycosidic bonds, GlycosylTransferases: GTnc binding protein kinase activity | details |
| CFinderADM001225 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process sphingolipid biosynthesis (plants) ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity phosphorylation zinc ion binding | details |
| CFinderADM001357 | lipid transporter activity lipid transport poly(A) RNA binding Lysosome RNA processing integral component of membrane ATP-dependent RNA helicase activity Spliceosome formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001429 | protein kinase CK2 complex transcription factor TFIID complex peroxisomal membrane regulation of ethylene-activated signaling pathway peroxisome organization organelle organization protein kinase regulator activity cytokinin-activated signaling pathway regulation of protein kinase activity response to starvation DNA-templated transcription, initiation autophagy Ubiquitin_Proteasome_system, E2: UBC jasmonic acid mediated signaling pathway Autophagy - animal Basal transcription factors Peroxisome SNARE interactions in vesicular transport single-organism cellular process translational initiation Ribosome biogenesis in eukaryotes protein heterodimerization activity translation initiation factor activity cytoplasmic part kinase activity phosphorylation | details |
| CFinderADM001451 | phosphopantetheine binding poly(A) RNA binding fatty acid biosynthetic process RNA processing ATP-dependent RNA helicase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001587 | Transcription_related, Transcription regulator: MED6 RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly RNA polymerase II transcriptional preinitiation complex assembly Ubiquitin_Proteasome_system, E3 adaptor: Cullin core mediator complex cullin-RING ubiquitin ligase complex mediator complex ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process regulation of transcription from RNA polymerase II promoter ubiquitin protein ligase activity Protein processing in endoplasmic reticulum | details |
| CFinderADM001656 | Transcription_related, Transcription regulator: SET Plant-pathogen interaction calcium ion binding | details |
| CFinderADM001820 | brassinosteroid mediated signaling pathway Transcription_related, Transcription regulator: SNF2 poly(A) RNA binding phosphoprotein phosphatase activity RNA processing ATP-dependent RNA helicase activity protein dephosphorylation cytosolic large ribosomal subunit Spliceosome Ribosome translation structural constituent of ribosome | details |
| CFinderADM001828 | Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex regulation of membrane potential voltage-gated potassium channel activity potassium ion transmembrane transport ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Plant-pathogen interaction Protein processing in endoplasmic reticulum integral component of plasma membrane | details |
| CFinderADM001935 | formation of glycosidic bonds, GlycosylTransferases: GTnc detection of calcium ion regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of photomorphogenesis calcium-mediated signaling regulation of biological process folic acid-containing compound biosynthetic process Ras signaling pathway 2-alkenal reductase [NAD(P)] activity protein binding calcium ion binding cytosol | details |
| CFinderADM001936 | oxidative photosynthetic carbon pathway formation of glycosidic bonds, GlycosylTransferases: GTnc hydroxyphenylpyruvate reductase activity rosmarinic acid biosynthesis II rosmarinic acid biosynthesis I glyoxylate reductase (NADP) activity hydroxypyruvate reductase activity 4-hydroxybenzoate biosynthesis I (eukaryotes) Transcription_related, Transcription factor: bHLH NAD binding protein dimerization activity Carbon metabolism cytosol | details |
| CFinderADM002300 | pyridoxal phosphate binding L-cystine L-cysteine-lyase (deaminating) cystathionine gamma-lyase activity hydroxyphenylpyruvate reductase activity oxidative photosynthetic carbon pathway Carbon metabolism L-cysteine desulfhydrase activity 'de novo' L-methionine biosynthetic process cystathionine beta-lyase activity hydroxypyruvate reductase activity glyoxylate reductase (NADP) activity rosmarinic acid biosynthesis II rosmarinic acid biosynthesis I L-aspartate:2-oxoglutarate aminotransferase activity seleno-amino acid biosynthesis L-phenylalanine:2-oxoglutarate aminotransferase activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation pyruvate decarboxylation to acetyl CoA 4-hydroxybenzoate biosynthesis I (eukaryotes) biosynthetic process NAD binding Biosynthesis of amino acids Ubiquitin_Proteasome_system, E3: RING | details |
Expression profiles
 Show details about module gene expression profiling |