CFinderADM001463's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| arogenate dehydratase activity | 3.07E-05 | GO:0047769 |
| RNA polymerase III core binding | 3.07E-05 | GO:0000994 |
| prephenate dehydratase activity | 3.07E-05 | GO:0004664 |
| transcription factor TFIIIB complex assembly | 3.07E-05 | GO:0070217 |
| negative regulation of transcription from RNA polymerase III promoter | 3.07E-05 | GO:0016480 |
| L-phenylalanine biosynthetic process | 4.29E-05 | GO:0009094 |
| L-phenylalanine biosynthesis II | 6.27E-05 | plantCyc |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 6.79E-05 | plantCyc |
| amino acid binding | 0.001244609 | GO:0016597 |
| cell part | 0.002303178 | GO:0044464 |
| Biosynthesis of amino acids | 0.002735545 | KEGG pathway |
| small GTPase mediated signal transduction | 0.003431947 | GO:0007264 |
| GTP binding | 0.011011431 | GO:0005525 |
| transcription, DNA-templated | 0.033754192 | GO:0006351 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000374 | AT5G13240 (1.00E-51) | transcription regulators |
| CRO_T012875 | AT1G65020 (2.00E-33) | unknown protein |
| CRO_T016911 | AT1G08250 (1.00E-113) | ADT6|arogenate dehydratase 6 |
| CRO_T023088 | AT5G44150 (4.00E-38) | unknown protein |
| CRO_T026906 | AT1G05060 (2.00E-43) | unknown protein |
| CRO_T027551 | AT1G05060 (8.00E-09) | unknown protein |
| CRO_T030563 | AT2G24765 (2.00E-42) | ARF3|ADP-ribosylation factor 3; ARL1|ARF-LIKE 1 |
| CRO_T032563 | AT3G09360 (1.00E-72) | Cyclin/Brf1-like TBP-binding protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001295 | 3-dehydroquinate biosynthesis I protein localization to cilium Transcription_related, Transcription factor: TUB cilium phosphatidylinositol binding cell part Biosynthesis of amino acids Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001462 | RNA polymerase III core binding negative regulation of transcription from RNA polymerase III promoter transcription factor TFIIIB complex assembly transcription, DNA-templated solute:proton antiporter activity cytoplasm hydrogen ion transmembrane transport nucleus mRNA surveillance pathway | details |
| CFinderADM001662 | L-mimosine synthase activity N-carbamoylputrescine amidase activity metallocarboxypeptidase activity pyrazolylalanine synthase activity beta-pyrazolylalanine synthase activity putrescine biosynthesis II polyamine biosynthetic process L-cysteine biosynthesis I cysteine synthase activity cysteine biosynthetic process from serine cellular amino acid biosynthetic process Arginine and proline metabolism cell part extracellular space zinc ion binding small GTPase mediated signal transduction GTP binding Carbon metabolism proteolysis Ubiquitin_Proteasome_system, E3: RING intracellular | details |
| CFinderADM001691 | posttranscriptional regulation of gene expression heat acclimation cell part small GTPase mediated signal transduction catalytic activity GTP binding intracellular | details |
| CFinderADM001811 | metallocarboxypeptidase activity Transcription_related, Transcription regulator: IWS1 clathrin adaptor complex extracellular space cell part Endocytosis biosynthetic process vesicle-mediated transport pyridoxal phosphate binding intracellular protein transport catalytic activity proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |