CFinderADM002019's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytidine to uridine editing | 1.01E-05 | GO:0016554 |
| Transcription_related, Transcription factor: Alfin-like | 2.54E-05 | TF family |
| nucleotide-excision repair | 9.27E-05 | GO:0006289 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.000177248 | cazy family |
| damaged DNA binding | 0.000427292 | GO:0003684 |
| histone binding | 0.000427292 | GO:0042393 |
| beta-galactosidase activity | 0.000427292 | GO:0004565 |
| Galactose metabolism | 0.000535481 | KEGG pathway |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.001839819 | GO:0043161 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.010412444 | cazy family |
| Protein processing in endoplasmic reticulum | 0.010886735 | KEGG pathway |
| carbohydrate metabolic process | 0.016289517 | GO:0005975 |
| nucleic acid binding | 0.033062407 | GO:0003676 |
| regulation of transcription, DNA-templated | 0.049377007 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006345 | AT2G42920 (4.00E-19) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T013523 | AT4G02750 (3.00E-133) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T016906 | AT5G20510 (6.00E-88) | AL5|alfin-like 5 |
| CRO_T029414 | AT1G72990 (0) | BGAL17|beta-galactosidase 17 |
| CRO_T030233 | AT3G45750 (4.00E-21) | Nucleotidyltransferase family protein |
| CRO_T033754 | AT1G16190 (8.00E-47) | RAD23A|RADIATION SENSITIVE23A |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000900 | TFIIK complex Transcription_related, Transcription factor: Alfin-like FAD diphosphatase activity flavin-containing compound metabolic process Cytochrome_P450, Cytochrome P450: CYP81D Taurine and hypotaurine metabolism positive regulation of phosphorylation of RNA polymerase II C-terminal domain anaerobic respiration positive regulation of cyclin-dependent protein serine/threonine kinase activity peptidyl-cysteine oxidation detection of hypoxia response to abiotic stimulus cyclin-dependent protein kinase holoenzyme complex Indole alkaloid biosynthesis cyclin-dependent protein serine/threonine kinase regulator activity sesamin biosynthesis positive regulation of transcription from RNA polymerase II promoter indole glucosinolate metabolic process defense response to other organism oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen hydrolase activity histone binding Basal transcription factors secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Purine metabolism | details |
| CFinderADM000905 | Transcription_related, Transcription factor: Alfin-like plastid envelope chloroplast part histone binding kinase activity phosphorylation transport regulation of transcription, DNA-templated | details |
| CFinderADM001075 | Transcription_related, Transcription factor: Alfin-like trans-cinnamoyl-CoA biosynthesis 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis Ubiquitin_Proteasome_system, DUB: OTU Flavonoid biosynthesis histone binding vindoline and vinblastine biosynthesis Phenylpropanoid biosynthesis dioxygenase activity ligase activity metabolic process | details |
| CFinderADM001179 | molybdopterin synthase complex carbohydrate metabolic process Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-galactosidase activity glucan endo-1,3-beta-D-glucosidase activity Galactose metabolism metalloendopeptidase activity 4 iron, 4 sulfur cluster binding zinc ion binding metal ion binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: FAR1 Starch and sucrose metabolism Protein processing in endoplasmic reticulum proteolysis catalytic activity nucleic acid binding mitochondrion regulation of transcription, DNA-templated | details |
| CFinderADM001249 | Pwp2p-containing subcomplex of 90S preribosome nucleotide-excision repair snoRNA binding damaged DNA binding isomerase activity photosynthesis, light reaction maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) membrane part proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: SKP1 small-subunit processome Photosynthesis Ribosome biogenesis in eukaryotes plastid protein folding Protein processing in endoplasmic reticulum | details |
| CFinderADM001250 | Pwp2p-containing subcomplex of 90S preribosome nucleotide-excision repair snoRNA binding damaged DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) proteasome-mediated ubiquitin-dependent protein catabolic process small-subunit processome Ribosome biogenesis in eukaryotes Protein processing in endoplasmic reticulum | details |
| CFinderADM001430 | calcium-mediated signaling signal transducer activity intracellular plasmodesma transferase activity | details |
| CFinderADM001465 | tRNA methyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc rRNA base methylation rRNA methyltransferase activity tRNA methylation pyrimidine deoxyribonucleotides de novo biosynthesis I iron-sulfur cluster binding beta-galactosidase activity pyrimidine ribonucleotides interconversion Galactose metabolism Purine metabolism carbohydrate metabolic process nucleic acid binding | details |
| CFinderADM001903 | clathrin coat of coated pit clathrin coat of trans-Golgi network vesicle cytidine to uridine editing clathrin-mediated endocytosis L-leucine degradation I protein import into peroxisome matrix leucine catabolic process fatty acid beta-oxidation clathrin heavy chain binding Valine, leucine and isoleucine degradation SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Galactose metabolism Peroxisome beta-galactosidase activity structural molecule activity cobalt ion binding intracellular protein transport ligase activity ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular carbohydrate metabolic process nucleic acid binding hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |