CFinderADM001525's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: NF-X1 | 3.93E-06 | TF family |
| transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.15E-05 | GO:0001078 |
| negative regulation of transcription from RNA polymerase II promoter | 3.58E-05 | GO:0000122 |
| Transcription_related, Transcription factor: HSF | 7.54E-05 | TF family |
| magnesium ion transport | 0.000182018 | GO:0015693 |
| magnesium ion transmembrane transport | 0.000182018 | GO:1903830 |
| magnesium ion transmembrane transporter activity | 0.000182018 | GO:0015095 |
| RNA polymerase II regulatory region sequence-specific DNA binding | 0.000182018 | GO:0000977 |
| transcription from RNA polymerase II promoter | 0.000267379 | GO:0006366 |
| phosphatidylcholine acyl editing | 0.000620087 | plantCyc |
| phospholipases | 0.000620087 | plantCyc |
| triacylglycerol degradation | 0.001028517 | plantCyc |
| nucleus | 0.0014721 | GO:0005634 |
| lipid metabolic process | 0.002123354 | GO:0006629 |
| sequence-specific DNA binding | 0.011209284 | GO:0043565 |
| transcription factor activity, sequence-specific DNA binding | 0.014567946 | GO:0003700 |
| transcription, DNA-templated | 0.016324432 | GO:0006351 |
| hydrolase activity | 0.020980795 | GO:0016787 |
| regulation of transcription, DNA-templated | 0.038821459 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T018299 | AT1G16010 (5.00E-77) | MGT2|magnesium transporter 2 |
| CRO_T028623 | AT5G05660 (0) | ATNFXL2|Arabidopsis NF-X like 2; EBI|EARLY BIRD; NFXL2|NFX1-like 2 |
| CRO_T030700 | AT1G32330 (4.00E-100) | ATHSFA1D|heat shock transcription factor A1D |
| CRO_T031009 | AT3G26950 (5.00E-172) | unknown protein |
| CRO_T031864 | AT2G30550 (1.00E-147) | DALL3|DAD1-Like Lipase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001524 | proteasome core complex assembly proteasome binding limit dextrinase activity pullulanase activity asparagine-tRNA ligase activity asparaginyl-tRNA aminoacylation formation of glycosidic bonds, GlycosylTransferases: GTnc starch catabolic process cell morphogenesis starch biosynthesis Transcription_related, Transcription factor: HSF starch biosynthetic process translational elongation microtubule-based movement nucleotidyltransferase activity translation elongation factor activity microtubule motor activity Aminoacyl-tRNA biosynthesis ATPase activity microtubule binding cytoplasm microtubule kinesin complex GTPase activity RNA transport GTP binding sequence-specific DNA binding ATP binding | details |
| CFinderADM001700 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Transcription_related, Transcription factor: NF-X1 positive regulation of long-day photoperiodism, flowering negative regulation of transcription from RNA polymerase II promoter temperature compensation of the circadian clock response to far red light response to blue light Circadian rhythm response to hydrogen peroxide Autophagy - animal Circadian rhythm - plant NOD-like receptor signaling pathway response to cold RNA polymerase II regulatory region sequence-specific DNA binding transcription from RNA polymerase II promoter nucleoplasm Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) nucleus MAPK signaling pathway - plant defense response intracellular signal transduction Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001824 | Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity Peptidoglycan biosynthesis negative regulation of transcription from RNA polymerase II promoter Propanoate metabolism 2-oxoisovalerate decarboxylation to isobutanoyl-CoA RNA polymerase I activity RNA polymerase II activity NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase III activity DNA-directed RNA polymerase II, core complex DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex transcription from RNA polymerase II promoter defense response Purine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc transcription, DNA-templated DNA binding | details |
| CFinderADM001948 | BRCA1-A complex BRISC complex phosphopantothenate biosynthesis I Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity pantothenate kinase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity Peptidoglycan biosynthesis positive regulation of DNA repair negative regulation of transcription from RNA polymerase II promoter coenzyme A biosynthetic process Pantothenate and CoA biosynthesis NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) transcription from RNA polymerase II promoter single-organism cellular process Homologous recombination nucleus MAPK signaling pathway - plant defense response intracellular signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc ATP binding phosphorylation | details |
| CFinderADM001951 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NF-X1 single organismal cell-cell adhesion regulation of photoperiodism, flowering pectic galactan metabolic process negative regulation of response to stimulus transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity negative regulation of transcription from RNA polymerase II promoter negative regulation of post-embryonic development negative regulation of reproductive process heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process shoot system development gene expression glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity RNA metabolic process Transcription_related, Transcription factor: G2-like phloem or xylem histogenesis RNA polymerase II regulatory region sequence-specific DNA binding transaminase activity transcription from RNA polymerase II promoter response to abscisic acid trans-Golgi network endosome nucleic acid binding | details |
| CFinderADM002208 | Transcription_related, Transcription factor: NF-X1 limit dextrinase activity pullulanase activity transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding formation of glycosidic bonds, GlycosylTransferases: GTnc negative regulation of transcription from RNA polymerase II promoter starch catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc RNA polymerase II activity RNA polymerase I activity NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding substrate-specific transmembrane transporter activity RNA polymerase III activity DNA-directed RNA polymerase II, core complex DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex starch biosynthetic process transcription from RNA polymerase II promoter defense response Purine metabolism chloroplast stroma transmembrane transport transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |