CFinderADM002208's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: NF-X1 | 1.50E-05 | TF family |
| limit dextrinase activity | 1.66E-05 | GO:0010303 |
| pullulanase activity | 1.66E-05 | GO:0051060 |
| transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.66E-05 | GO:0001078 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 2.63E-05 | cazy family |
| negative regulation of transcription from RNA polymerase II promoter | 5.24E-05 | GO:0000122 |
| starch catabolic process | 9.43E-05 | GO:0005983 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 1.00E-04 | cazy family |
| RNA polymerase II activity | 0.000109264 | GO:0001055 |
| RNA polymerase I activity | 0.000109264 | GO:0001054 |
| NOD-like receptor signaling pathway | 0.000114948 | KEGG pathway |
| RNA polymerase II regulatory region sequence-specific DNA binding | 0.00017669 | GO:0000977 |
| substrate-specific transmembrane transporter activity | 0.00017669 | GO:0022891 |
| RNA polymerase III activity | 0.00017669 | GO:0001056 |
| DNA-directed RNA polymerase II, core complex | 0.000176792 | GO:0005665 |
| DNA-directed RNA polymerase I complex | 0.000176792 | GO:0005736 |
| DNA-directed RNA polymerase III complex | 0.000191794 | GO:0005666 |
| starch biosynthetic process | 0.000298085 | GO:0019252 |
| transcription from RNA polymerase II promoter | 0.000391754 | GO:0006366 |
| defense response | 0.003430635 | GO:0006952 |
| Purine metabolism | 0.005420954 | KEGG pathway |
| chloroplast stroma | 0.01613735 | GO:0009570 |
| transmembrane transport | 0.019674131 | GO:0055085 |
| transcription, DNA-templated | 0.021501744 | GO:0006351 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012687 | AT2G41340 (3.00E-59) | RPB5D|RNA polymerase II fifth largest subunit, D |
| CRO_T019509 | AT3G16520 (4.00E-73) | UGT88A1|UDP-glucosyl transferase 88A1 |
| CRO_T020218 | AT5G04360 (0) | ATLDA|limit dextrinase; ATPU1|PULLULANASE 1 |
| CRO_T026262 | AT3G55830 (4.00E-55) | EPC1|ECTOPICALLY PARTING CELLS |
| CRO_T027721 | - | - |
| CRO_T028623 | AT5G05660 (0) | ATNFXL2|Arabidopsis NF-X like 2; EBI|EARLY BIRD; NFXL2|NFX1-like 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001525 | Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding negative regulation of transcription from RNA polymerase II promoter Transcription_related, Transcription factor: HSF magnesium ion transport magnesium ion transmembrane transport magnesium ion transmembrane transporter activity RNA polymerase II regulatory region sequence-specific DNA binding transcription from RNA polymerase II promoter phosphatidylcholine acyl editing phospholipases triacylglycerol degradation nucleus lipid metabolic process sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding transcription, DNA-templated hydrolase activity regulation of transcription, DNA-templated | details |
| CFinderADM001700 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Transcription_related, Transcription factor: NF-X1 positive regulation of long-day photoperiodism, flowering negative regulation of transcription from RNA polymerase II promoter temperature compensation of the circadian clock response to far red light response to blue light Circadian rhythm response to hydrogen peroxide Autophagy - animal Circadian rhythm - plant NOD-like receptor signaling pathway response to cold RNA polymerase II regulatory region sequence-specific DNA binding transcription from RNA polymerase II promoter nucleoplasm Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) nucleus MAPK signaling pathway - plant defense response intracellular signal transduction Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001824 | Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity Peptidoglycan biosynthesis negative regulation of transcription from RNA polymerase II promoter Propanoate metabolism 2-oxoisovalerate decarboxylation to isobutanoyl-CoA RNA polymerase I activity RNA polymerase II activity NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase III activity DNA-directed RNA polymerase II, core complex DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex transcription from RNA polymerase II promoter defense response Purine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc transcription, DNA-templated DNA binding | details |
| CFinderADM001948 | BRCA1-A complex BRISC complex phosphopantothenate biosynthesis I Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity pantothenate kinase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity Peptidoglycan biosynthesis positive regulation of DNA repair negative regulation of transcription from RNA polymerase II promoter coenzyme A biosynthetic process Pantothenate and CoA biosynthesis NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) transcription from RNA polymerase II promoter single-organism cellular process Homologous recombination nucleus MAPK signaling pathway - plant defense response intracellular signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc ATP binding phosphorylation | details |
| CFinderADM001951 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NF-X1 single organismal cell-cell adhesion regulation of photoperiodism, flowering pectic galactan metabolic process negative regulation of response to stimulus transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity negative regulation of transcription from RNA polymerase II promoter negative regulation of post-embryonic development negative regulation of reproductive process heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process shoot system development gene expression glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity RNA metabolic process Transcription_related, Transcription factor: G2-like phloem or xylem histogenesis RNA polymerase II regulatory region sequence-specific DNA binding transaminase activity transcription from RNA polymerase II promoter response to abscisic acid trans-Golgi network endosome nucleic acid binding | details |
| CFinderADM002005 | Betalain biosynthesis pullulanase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 3 iron, 4 sulfur cluster binding limit dextrinase activity succinate dehydrogenase (ubiquinone) activity calcium-dependent cysteine-type endopeptidase activity cellular aromatic compound metabolic process ferrous iron binding starch catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc starch biosynthetic process Transcription_related, Transcription regulator: SET TCA cycle II (plants and fungi) tricarboxylic acid cycle aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding dioxygenase activity electron carrier activity carbohydrate binding mitochondrial inner membrane Carbon metabolism proteolysis chloroplast stroma | details |
| CFinderADM002150 | Cytochrome_P450, Cytochrome P450: CYP701A ent-kaur-16-en-19-ol oxidase activity ent-kaurene oxidase activity ent-kaur-16-en-19-al oxidase activity ent-kaurene oxidation to kaurenoic acid GA12 biosynthesis gibberellin biosynthetic process NOD-like receptor signaling pathway Diterpenoid biosynthesis chloroplast outer membrane Transcription_related, Transcription factor: TCP ATP-dependent peptidase activity single-organism cellular process cell division metalloendopeptidase activity defense response formation of glycosidic bonds, GlycosylTransferases: GTnc endoplasmic reticulum chloroplast envelope proteolysis iron ion binding heme binding | details |
| CFinderADM002260 | formation of glycosidic bonds, GlycosylTransferases: GTnc CIA complex single organismal cell-cell adhesion pectic galactan metabolic process heparan sulfate proteoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glycosaminoglycan biosynthetic process glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis iron-sulfur cluster assembly adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation response to abscisic acid transferase activity, transferring acyl groups endosome trans-Golgi network GTP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |