CFinderADM001700's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.02E-05 | GO:0001078 |
| Transcription_related, Transcription factor: NF-X1 | 2.02E-05 | TF family |
| positive regulation of long-day photoperiodism, flowering | 3.85E-05 | GO:0048578 |
| negative regulation of transcription from RNA polymerase II promoter | 3.85E-05 | GO:0000122 |
| temperature compensation of the circadian clock | 3.85E-05 | GO:0010378 |
| response to far red light | 6.46E-05 | GO:0010218 |
| response to blue light | 6.46E-05 | GO:0009637 |
| Circadian rhythm | 8.65E-05 | KEGG pathway |
| response to hydrogen peroxide | 9.06E-05 | GO:0042542 |
| Autophagy - animal | 0.000229574 | KEGG pathway |
| Circadian rhythm - plant | 0.000229574 | KEGG pathway |
| NOD-like receptor signaling pathway | 0.000229574 | KEGG pathway |
| response to cold | 0.000246084 | GO:0009409 |
| RNA polymerase II regulatory region sequence-specific DNA binding | 0.000257459 | GO:0000977 |
| transcription from RNA polymerase II promoter | 0.000383304 | GO:0006366 |
| nucleoplasm | 0.000591815 | GO:0005654 |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.000780471 | kinase family |
| nucleus | 0.002909113 | GO:0005634 |
| MAPK signaling pathway - plant | 0.003743837 | KEGG pathway |
| defense response | 0.003776215 | GO:0006952 |
| intracellular signal transduction | 0.004133456 | GO:0035556 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.014490013 | ubs family |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.014490013 | ubs family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.0161608 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004032 | AT4G24760 (5.00E-149) | alpha/beta-Hydrolases superfamily protein |
| CRO_T008966 | AT4G33950 (1.00E-93) | ATOST1|OPEN STOMATA 1; SNRK2-6|SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6; SNRK2.6|SNF1-RELATED PROTEIN KINASE 2.6 |
| CRO_T019509 | AT3G16520 (4.00E-73) | UGT88A1|UDP-glucosyl transferase 88A1 |
| CRO_T023158 | AT1G22770 (0) | GI|GIGANTEA |
| CRO_T026304 | AT4G14096 (6.00E-20) | F-box/RNI-like superfamily protein |
| CRO_T028623 | AT5G05660 (0) | ATNFXL2|Arabidopsis NF-X like 2; EBI|EARLY BIRD; NFXL2|NFX1-like 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000261 | Protein export Ubiquitin mediated proteolysis formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: F-box nucleotide binding | details |
| CFinderADM000855 | spermidine biosynthesis I putrescine N-methyltransferase activity spermidine synthase activity hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity regulation of cyclin-dependent protein serine/threonine kinase activity spermidine biosynthetic process protein kinase binding Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) proton transport Cysteine and methionine metabolism Plant-pathogen interaction MAPK signaling pathway - plant intracellular signal transduction vacuolar membrane methylation Oxidative phosphorylation transmembrane transport protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001080 | Cytochrome_P450, Cytochrome P450: CYP75B pantothenate kinase activity coenzyme A biosynthetic process phosphopantothenate biosynthesis I Pantothenate and CoA biosynthesis costunolide biosynthesis gossypetin metabolism luteolin biosynthesis Autophagy - animal Cytochrome_P450, Cytochrome P450: CYP71B flavonol biosynthesis secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box phosphorylation heme binding iron ion binding hydrolase activity | details |
| CFinderADM001228 | hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase protein kinase binding regulation of cyclin-dependent protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: G2-like proton transport intracellular signal transduction MAPK signaling pathway - plant vacuolar membrane Oxidative phosphorylation transmembrane transport protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001525 | Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding negative regulation of transcription from RNA polymerase II promoter Transcription_related, Transcription factor: HSF magnesium ion transport magnesium ion transmembrane transport magnesium ion transmembrane transporter activity RNA polymerase II regulatory region sequence-specific DNA binding transcription from RNA polymerase II promoter phosphatidylcholine acyl editing phospholipases triacylglycerol degradation nucleus lipid metabolic process sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding transcription, DNA-templated hydrolase activity regulation of transcription, DNA-templated | details |
| CFinderADM001824 | Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity Peptidoglycan biosynthesis negative regulation of transcription from RNA polymerase II promoter Propanoate metabolism 2-oxoisovalerate decarboxylation to isobutanoyl-CoA RNA polymerase I activity RNA polymerase II activity NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase III activity DNA-directed RNA polymerase II, core complex DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex transcription from RNA polymerase II promoter defense response Purine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc transcription, DNA-templated DNA binding | details |
| CFinderADM001853 | Carbon metabolism Vitamin B6 metabolism Transcription_related, Transcription regulator: LIM fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate choline biosynthesis I Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) 6-phosphofructokinase activity cytoplasm glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) phosphatase activity FMN binding MAPK signaling pathway - plant dephosphorylation intracellular signal transduction ATP binding oxidoreductase activity | details |
| CFinderADM001948 | BRCA1-A complex BRISC complex phosphopantothenate biosynthesis I Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity pantothenate kinase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity Peptidoglycan biosynthesis positive regulation of DNA repair negative regulation of transcription from RNA polymerase II promoter coenzyme A biosynthetic process Pantothenate and CoA biosynthesis NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) transcription from RNA polymerase II promoter single-organism cellular process Homologous recombination nucleus MAPK signaling pathway - plant defense response intracellular signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc ATP binding phosphorylation | details |
| CFinderADM001951 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NF-X1 single organismal cell-cell adhesion regulation of photoperiodism, flowering pectic galactan metabolic process negative regulation of response to stimulus transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity negative regulation of transcription from RNA polymerase II promoter negative regulation of post-embryonic development negative regulation of reproductive process heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process shoot system development gene expression glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity RNA metabolic process Transcription_related, Transcription factor: G2-like phloem or xylem histogenesis RNA polymerase II regulatory region sequence-specific DNA binding transaminase activity transcription from RNA polymerase II promoter response to abscisic acid trans-Golgi network endosome nucleic acid binding | details |
| CFinderADM001973 | Pyruvate metabolism response to stress Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: ERF Ubiquitin_Proteasome_system, E3 adaptor: F-box adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity protein phosphorylation | details |
| CFinderADM002150 | Cytochrome_P450, Cytochrome P450: CYP701A ent-kaur-16-en-19-ol oxidase activity ent-kaurene oxidase activity ent-kaur-16-en-19-al oxidase activity ent-kaurene oxidation to kaurenoic acid GA12 biosynthesis gibberellin biosynthetic process NOD-like receptor signaling pathway Diterpenoid biosynthesis chloroplast outer membrane Transcription_related, Transcription factor: TCP ATP-dependent peptidase activity single-organism cellular process cell division metalloendopeptidase activity defense response formation of glycosidic bonds, GlycosylTransferases: GTnc endoplasmic reticulum chloroplast envelope proteolysis iron ion binding heme binding | details |
| CFinderADM002192 | cytosol inosine catabolic process inosine nucleosidase activity photoreceptor activity glucose-6-phosphate isomerase activity entrainment of circadian clock defense response to fungus, incompatible interaction chromatin gluconeogenesis pyrimidine ribonucleosides salvage II response to UV-B Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) adenine and adenosine salvage II GDP-mannose biosynthesis guanosine nucleotides degradation I transferase activity, transferring alkyl or aryl (other than methyl) groups sucrose degradation III (sucrose invertase) pyrimidine salvage pathway starch biosynthesis sucrose biosynthesis II adenosine nucleotides degradation I sucrose biosynthesis I (from photosynthesis) UDP-glucosyltransferase activity glycolytic process chromatin binding gluconeogenesis I glycolysis I (from glucose 6-phosphate) nucleus protein homodimerization activity Terpenoid backbone biosynthesis signal transduction intracellular signal transduction MAPK signaling pathway - plant Carbon metabolism protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM002208 | Transcription_related, Transcription factor: NF-X1 limit dextrinase activity pullulanase activity transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding formation of glycosidic bonds, GlycosylTransferases: GTnc negative regulation of transcription from RNA polymerase II promoter starch catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc RNA polymerase II activity RNA polymerase I activity NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding substrate-specific transmembrane transporter activity RNA polymerase III activity DNA-directed RNA polymerase II, core complex DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex starch biosynthetic process transcription from RNA polymerase II promoter defense response Purine metabolism chloroplast stroma transmembrane transport transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |