CFinderADM001529's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 7.76E-05 | cazy family |
| Transcription_related, Transcription regulator: HMG | 7.76E-05 | TF family |
| cell differentiation | 0.000323786 | GO:0030154 |
| Transcription_related, Transcription factor: GRAS | 0.002054717 | TF family |
| Golgi membrane | 0.002379511 | GO:0000139 |
| transferase activity, transferring glycosyl groups | 0.004462969 | GO:0016757 |
| cell wall organization | 0.005889727 | GO:0071555 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.006956925 | ubs family |
| sequence-specific DNA binding | 0.009049302 | GO:0043565 |
| transcription factor activity, sequence-specific DNA binding | 0.012544815 | GO:0003700 |
| transcription, DNA-templated | 0.019492816 | GO:0006351 |
| regulation of transcription, DNA-templated | 0.040793505 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000340 | AT1G14920 (4.00E-26) | GAI|GIBBERELLIC ACID INSENSITIVE; RGA2|RESTORATION ON GROWTH ON AMMONIA 2 |
| CRO_T010586 | AT5G52120 (4.00E-20) | AtPP2-A14|phloem protein 2-A14 |
| CRO_T011849 | AT3G51880 (3.00E-14) | HMGB1|high mobility group B1; NFD1|NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1 |
| CRO_T013404 | AT3G24530 (7.00E-11) | AAA-type ATPase family protein / ankyrin repeat family protein |
| CRO_T018462 | AT1G70630 (4.00E-17) | RAY1|REDUCED ARABINOSE YARIV 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001024 | formation of glycosidic bonds, GlycosylTransferases: GTnc membrane Golgi membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001528 | protein folding in endoplasmic reticulum defense response signaling pathway, resistance gene-dependent mRNA export from nucleus ER membrane protein complex Transcription_related, Transcription regulator: HMG nuclear membrane nuclear pore response to auxin RNA transport vacuolar membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box Golgi apparatus | details |
| CFinderADM001888 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity dihydropteroate synthase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Folate biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc tetrahydrofolate biosynthesis II folic acid-containing compound biosynthetic process transferase activity, transferring glycosyl groups Golgi membrane cell wall organization kinase activity phosphorylation | details |
| CFinderADM001889 | regulation of leaf development Circadian rhythm formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: TCP transferase activity, transferring glycosyl groups Golgi membrane cell wall organization mitochondrion | details |
| CFinderADM002018 | SUMO activating enzyme activity formation of glycosidic bonds, GlycosylTransferases: GTnc SUMO activating enzyme complex protein sumoylation Ubiquitin mediated proteolysis transferase activity, transferring glycosyl groups cell wall organization Golgi membrane | details |
| CFinderADM002236 | protein phosphatase type 2A complex protein phosphatase type 2A regulator activity regulation of protein phosphatase type 2A activity signal transduction mRNA surveillance pathway RNA degradation | details |
| CFinderADM002273 | nuclear export signal receptor activity protein export from nucleus protein import into nucleus nuclear envelope Ran GTPase binding RNA processing plasmodesma nucleic acid binding nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |